http://bigdatasummerinst.sph.umich.edu/wiki2016/api.php?action=feedcontributions&feedformat=atom&user=Sevigny 2026-04-30T17:44:40Z User contributions MediaWiki 1.26.3 http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=74 2016-08-01T17:08:57Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ek1DaVZtb0Vvcnc Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cHVxU0JCRWlDX0U Predicting CKD and Potential Risk Factors with Multiple Linear Regression] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MVFCSXZzYUJlMXM The ICIJ Panama Leak: Temporal &amp; Spatial Visualizations of the World&#039;s Hidden Wealth]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWkwMDdzM0h1MVU A Streamlined Approach for Comparing Two Genomic Catalogs]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MnZNVWJKLWt5QTQ From Interviews to Blood Tests: Using Statistical and Machine Learning Models to Predict Kidney Function]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QmdiYkJYamRwelk Flagging Facilities: An Empirical Null Method]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=73 2016-08-01T15:05:06Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ek1DaVZtb0Vvcnc Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cHVxU0JCRWlDX0U Predicting CKD and Potential Risk Factors with Multiple Linear Regression] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MVFCSXZzYUJlMXM The ICIJ Panama Leak: Temporal &amp; Spatial Visualizations of the World&#039;s Hidden Wealth]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWkwMDdzM0h1MVU A Streamlined Approach for Comparing Two Genomic Catalogs]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MnZNVWJKLWt5QTQ From Interviews to Blood Tests: Using Statistical and Machine Learning Models to Predict Kidney Function]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-alFGV09zd0UzNTQ Flagging Facilities: An Empirical Null Method]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=72 2016-07-30T13:41:30Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ek1DaVZtb0Vvcnc Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cHVxU0JCRWlDX0U Predicting CKD and Potential Risk Factors with Multiple Linear Regression] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MVFCSXZzYUJlMXM The ICIJ Panama Leak: Temporal &amp; Spatial Visualizations of the World&#039;s Hidden Wealth]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWkwMDdzM0h1MVU A Streamlined Approach for Comparing Two Genomic Catalogs]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MnZNVWJKLWt5QTQ From Interviews to Blood Tests: Using Statistical and Machine Learning Models to Predict Kidney Function]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=71 2016-07-28T21:59:01Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ek1DaVZtb0Vvcnc Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cHVxU0JCRWlDX0U Predicting CKD and Potential Risk Factors with Multiple Linear Regression] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MVFCSXZzYUJlMXM The ICIJ Panama Leak: Temporal &amp; Spatial Visualizations of the World&#039;s Hidden Wealth]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWkwMDdzM0h1MVU A Streamlined Approach for Comparing Two Genomic Catalogs]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=70 2016-07-28T21:23:17Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cHVxU0JCRWlDX0U Predicting CKD and Potential Risk Factors with Multiple Linear Regression] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MVFCSXZzYUJlMXM The ICIJ Panama Leak: Temporal &amp; Spatial Visualizations of the World&#039;s Hidden Wealth]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWkwMDdzM0h1MVU A Streamlined Approach for Comparing Two Genomic Catalogs]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=69 2016-07-28T18:39:39Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SUpnM2NpeDdyWlE Data Curation &amp; Wrangling] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=68 2016-07-28T18:36:20Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-U05xUkswNFM3Unc Twitter Sentiment Analysis &amp; The Stock Market] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=67 2016-07-27T14:25:26Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eWN1WTFmNWJPNFE Single Cell Diffenence in Gene Expression between Macular and Peripheral Human Retinal Cells] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=66 2016-07-27T00:40:44Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MjZENURlQzNuaEU Perservation of Semantic Parallels Through Word2Vec] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=65 2016-07-26T22:28:02Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-enM2bF90VHNnMmc Symposium Welcome] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=64 2016-07-26T20:14:47Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of Alcohol Consumption and Stress Levels] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=63 2016-07-26T20:08:52Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of<br /> Alcohol Consumption and Stress Levels] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=62 2016-07-26T20:06:04Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of <br /> Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of<br /> Alcohol Consumption and Stress Levels] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=61 2016-07-26T20:04:16Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OVY5WlNhT2VnOTA Data Mining]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-amN6NkMxNnFLNm8 Electronic Health Records (EHR)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-OEtIT1E2RHFFQlk Genomics]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TG9ZMzJFcngxWm8 Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WHc3SXZTdmhXMjA Clustering Gene Expression Profiles of Single Cells Using Expectation Maximization] <br /> * [http://www.example.com -] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RnVJTHRKWngyRkU Using Data Mining Techniques and Classification Algorithms to Predict Impact of <br /> Academic Papers] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dmJwRUV0WGVLTDA Data Mining: Association Rules Using the Apriori Algorithm] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-cW82UmNwQkk3MnM Exploring U.S. Population Stratification with Genes for Good Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UTdXSnNVMU4ySkk Network Structure in Offshore Leaks Data] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Z2JsZ3ZMNW53QUE A Genome-Wide Association Study for Mental Illness] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmkyWXJSWUV1bjg Evaluation of the End Stage Renal Disease Quality Incentive Program] <br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VGJQcTQtNnZpSFU Genome-Wide Association Study of<br /> Alcohol Consumption and Stress Levels] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=60 2016-07-26T19:39:17Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXkydVBKMm56WHc Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MWxjT0JoeXc1b2c Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-bWkwWkhaZy1RaUk Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WmN3R3M3QWtCd00 Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://web.eecs.umich.edu/~jabernet/BDSI_2016/flint_water_talk.html#1 Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZlVYd3NiYldiQ28 Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> &#039;&#039;&#039;Student Group Presentations&#039;&#039;&#039;<br /> * [http://www.example.com Data Mining]<br /> * [http://www.example.com Electronic Health Records (EHR)]<br /> * [http://www.example.com Genomics]<br /> * [http://www.example.com Machine Learning]<br /> <br /> &#039;&#039;&#039;Student Poster Presentations&#039;&#039;&#039;<br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title] <br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=59 2016-07-26T19:23:15Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [http://www.example.com Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [http://www.example.com Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [http://www.example.com Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://www.example.com Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> Student Group Presentations<br /> * [http://www.example.com Data Mining]<br /> * [http://www.example.com EHR]<br /> * [http://www.example.com Genomics]<br /> * [http://www.example.com Machine Learning]<br /> <br /> Student Poster Presentations<br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] - <br /> * [http://www.example.com link title] -<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=58 2016-07-20T16:18:33Z

<p>Sevigny: /* Day 28 July 20 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9acb4056-07b8-4f59-89db-0a7d323439a1 Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [http://www.example.com Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [http://www.example.com Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [http://www.example.com Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://www.example.com Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=57 2016-07-19T16:22:01Z

<p>Sevigny: /* Day 27 July 19 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17eac995-13a4-4ca5-9bab-aaaf1a3fd2b8 Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [http://www.example.com Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [http://www.example.com Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [http://www.example.com Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [http://www.example.com Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://www.example.com Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=56 2016-07-19T15:27:10Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [http://www.example.com Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [http://www.example.com Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com Identifying and Correcting for Contamination in DNA Sequencing Studies] - Michael Boehnke, PhD<br /> * [http://www.example.com Assessing Time-Varying Causal Effect Moderation using Intensively Collected Longitudinal Intervention Data] - Susan Murphy, PhD<br /> * [http://www.example.com Statistical Methods for Personalized Medicine] - Jeremy Taylor, PhD<br /> * [http://www.example.com Software For (and With) Big Data] - Eytan Adar, PhD<br /> * [http://www.example.com Using Doctors&#039; Notes to Uncover Everyday Natural Experiments in Healthcare] - Karandeep Singh, MD<br /> * [http://www.example.com Data Science for the Flint Water Crisis] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com Doing Data Science] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=55 2016-07-19T15:04:50Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [http://www.example.com Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> === Day 28 July 20 ===<br /> * [http://www.example.com Journey Lecture (slides &amp; audio)] - Phil Boonstra, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=54 2016-07-19T13:19:26Z

<p>Sevigny: /* Day 27 July 19 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MHdqMGNJbGUzMWc Data Privacy and Security (slides)] - Jacob Abernethy, PhD<br /> * [http://www.example.com Learning Health Systems (slides &amp; audio)] - Karandeep Singh, PhD<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=53 2016-07-18T18:43:50Z

<p>Sevigny: /* Day 26 July 18 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebd61dd6-1f44-4d48-b6f6-34e7c532c601 Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a97b5884-2ffc-4c56-a979-7a27f4b0ce78 Adventures in Human Genetics (slides &amp; audio)] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=52 2016-07-18T14:55:58Z

<p>Sevigny: /* Day 26 July 18 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [http://www.example.com Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> * [http://www.example.com link title] - Goncalo Abecasis, PhD, Department of Biostatistics Chair at the University of Michigan<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=51 2016-07-18T14:52:32Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5e64930a-2f7a-4f69-95b7-61afb986fd00 Supervised Machine Learning 3 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [http://www.example.com Population Genetics (slides &amp; audio)] - Sebastian Zoellner, PhD<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=50 2016-07-15T18:30:29Z

<p>Sevigny: /* Day 25 July 15 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d667c41f-bdc8-4643-9aaa-c2f6f4a9a5b1 My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=49 2016-07-15T16:45:36Z

<p>Sevigny: /* Day 25 July 15 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=48 2016-07-15T14:18:49Z

<p>Sevigny: /* Day 25 July 15 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com Journey Lecture (audio)] - Ted Lawrence, MD, PhD, Chair of Radiation Oncology at the University of Michigan and Director of the University of Michigan Comprehensive Cancer Center<br /> * [http://www.example.com My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=47 2016-07-15T14:15:27Z

<p>Sevigny: /* Day 25 July 15 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=89a6661b-5363-4546-9452-d9bb76ca2bd0 Journey Lecture (audio)] - Ted Lawrence, MD, PhD, Chair of Radiation Oncology at the University of Michigan and Director of the University of Michigan Comprehensive Cancer Center<br /> * [http://www.example.com My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=46 2016-07-15T13:14:38Z

<p>Sevigny: /* Day 25 July 15 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com Journey Lecture (audio)] - Ted Lawrence, MD, PhD, Chair of Radiation Oncology at the University of Michigan and Director of the University of Michigan Comprehensive Cancer Center<br /> * [http://www.example.com My Journey to Bigger than Average Data (slides &amp; audio)] - Joe Messana, MD<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=45 2016-07-14T17:31:41Z

<p>Sevigny: /* Day 24 July 14 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SFhqcmJyUHBPaDg Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=44 2016-07-14T17:24:12Z

<p>Sevigny: /* Day 19 July 7 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computation 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=43 2016-07-14T17:23:33Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning 1 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=42 2016-07-14T14:54:24Z

<p>Sevigny: /* Day 24 July 14 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WkZpekZReDY5Mnc Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=41 2016-07-14T14:24:28Z

<p>Sevigny: /* Symposium */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * [http://www.example.com link title] - Michael Boehnke, PhD<br /> * [http://www.example.com link title] - Susan Murphy, PhD<br /> * [http://www.example.com link title] - Jeremy Taylor, PhD<br /> * [http://www.example.com link title] - Eytan Adar, PhD<br /> * [http://www.example.com link title] - Karandeep Singh, MD<br /> * [http://www.example.com link title] - Jacob Abernethy, PhD and Eric Schwartz. PhD<br /> * [http://www.example.com link title] - Rachel Schutt, Chief Data Scientist at News Corp<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=40 2016-07-14T14:17:56Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Symposium ==<br /> * <br /> * <br /> * <br /> * <br /> * <br /> * <br /> *<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=39 2016-07-14T13:13:42Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com Social Netwrok Analysis (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Unsupervised Machine Learning 2 (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=38 2016-07-13T12:42:44Z

<p>Sevigny: /* Day 23 July 13 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=37 2016-07-13T12:41:13Z

<p>Sevigny: /* Day 23 July 13 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-TmE1eEh3dGZ1UG8 Reproducible Research (slides)] - Jed Carlson,<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=36 2016-07-12T16:31:56Z

<p>Sevigny: /* Day 22 July 12 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=83c6bcb5-5912-443f-a813-ba3131db1ed5 Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=35 2016-07-12T15:08:48Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-WVpQWnZlWGI1azQ Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Um0xeDJhUjBBLXM Visualization 2 (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Personalized Medicine (slides &amp; audio)] - Lu Wang, PhD<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=34 2016-07-11T17:43:01Z

<p>Sevigny: /* Day 19 July 7 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-MlhhOHR4ZlpfT1U Unsupervised Machine Learning (slides)] - Jenna Wiens, PhD<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=33 2016-07-11T16:05:32Z

<p>Sevigny: /* Day 21 July 11 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d11132e6-4990-459b-bd15-9bbd5773a06c Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=32 2016-07-11T13:46:21Z

<p>Sevigny: /* Day 21 July 11 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Supervised Machine Learning 2 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=31 2016-07-11T13:45:19Z

<p>Sevigny: /* Day 21 July 11 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Machine Learning 1 (slides &amp; audio)] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=30 2016-07-11T13:44:29Z

<p>Sevigny: /* Day 21 July 11 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com Visualization 1 (slides)] - Eytan Adar, PhD<br /> * [http://www.example.com Machine Learning 1 ()] - Hui Jiang, PhD<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=29 2016-07-08T17:40:00Z

<p>Sevigny: /* Day 20 July 8 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=28 2016-07-08T16:21:18Z

<p>Sevigny: /* Day 20 July 8 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91300088-48cf-4f29-9719-f9ff33c518ee The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> * [http://www.example.com link title] - Sharon Kardia, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=27 2016-07-08T15:52:39Z

<p>Sevigny: /* 2016 Presentations */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com The Moments and the Journey (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> * [http://www.example.com link title] - Sharon Kardia, PhD<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=26 2016-07-08T15:32:21Z

<p>Sevigny: /* Day 20 July 8 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=5ebc1b87-64b4-48e3-9826-228fc595a254 Bayes Computation 2 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny http://bigdatasummerinst.sph.umich.edu/wiki2016/index.php?title=Main_Page&diff=25 2016-07-08T14:14:24Z

<p>Sevigny: /* Day 20 July 8 */</p> <hr /> <div>&lt;strong&gt;Welcome to the U-M Big Data 2016 Summer Program Wiki!&lt;/strong&gt;<br /> <br /> Consult the [//meta.wikimedia.org/wiki/Help:Contents User&#039;s Guide] for information on using the wiki software.<br /> <br /> == Reading Material ==<br /> <br /> === Data Mining Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5Vd3ZLeHB1bzN4VXM Automatic Construction and Natural-Language Description]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSGFjUHNjeUpPcG8 Interestingness Measures for Data Mining a Survey]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcEwxSzJXRkJvVjg Fast Algorithms for Mining Association Rules]<br /> <br /> === EHR Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS3BhWW00YURHZTg Statistical Inference, Learning and Models in Big Data]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VXzVHX244ejZDUVE USRDS 2015 Annual Data Report, Volume 1: Chronic Kidney Disease]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VSzNuZnNjV3d0ZTA Dialysis Facility Characteristics and Services]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VS1FVeUJRMTRhODA Data Dictionary for Quarterly Dialysis Facility Compare]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VcnFmSVIyZ2MwRHM USRDS Introduction to Volume 1: CKD in the United States]<br /> <br /> === Genomics Group ===<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VdHhkcmJYS2h4RjA A Global Reference for Human Genetic Variation]<br /> * [https://drive.google.com/open?id=0B3PztChLdg5VU0JmRXFWY1ZBdHM A Map of Human Genome Variation from Population-Scale Sequencing]<br /> <br /> == 2016 Presentations ==<br /> <br /> === Day 1: June 13 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-RTNSaC11TGxiSnM Orientation 2016 (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-UmNwWkx3T2hqbG8 Welcome Reception (slides)] - Bhramar Mukherjee, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-R2d5VFlLUXc3N28 Computing Resources (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-Tl9FbVR4clBKUjg Ethics Review (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SXNvY0p2TGJpdVE On Being A Scientist (slides)]<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-blBLSEdxdnVBWm8 Life in Ann Arbor (slides)] - Evan Reynolds, Biostatistics PhD Student<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-SENCWUFHa2gyb2M Intro to Probabilities and Distributions (file)] - Rebecca Rothwell, Biostatistics PhD student<br /> <br /> === Day 2: June 14 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Computing Platforms (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=59e064c0-b252-4e24-a2eb-636b039c13a6 Introductory Statistics (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 3: June 15 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QUk4RXhPR1A2TGc Intro to Unix (slides)] - Hyun Min Kang, PhD<br /> <br /> === Day 4: June 16 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=329bb282-bb1f-41bf-838b-d152a1cddd61 Observational Data, Bias and Confounding (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 5 June 17 ===<br /> * [https://github.com/thejakeyboy/Python-Lectures Data Structure using Python (website)] - Jacob Abernethy, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=649853b9-0c90-4e6c-a087-5c8f4da1fa9d From Pure Mathematics to Gene Discovery: A Biostatistician&#039;s Journey (slides &amp; audio)] - Michael Boehnke, PhD<br /> <br /> === Day 6 June 20 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-YWNNSVJCUmtUMDQ Statistical Modeling using R (slides)] - Phil Boonstra, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a43dd502-ebe0-4f0e-829f-ce7bbe003283 Study Design and Inference (slides &amp; audio)] - Roderick Little, PhD<br /> <br /> === Day 7 June 21 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6eaf5ffb-7df8-4daf-b4ac-117e251e47ce Visualization using R (slides &amp; audio)] - Phil Boonstra, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-QXJ0NDNrOWNramc Distributed Computing (slides)] - Harsha Madhyastha, PhD<br /> <br /> === Day 8 June 22 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dDFQaUVRQXRLcDA Fundamentals of Data Processing (slides)] - Jed Carlson, Biostatistics PhD student<br /> <br /> === Day 9 June 23 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9b46b28b-f2ab-4f80-9f97-2935564fa81d Matrix Computation (audio)] - Jason Estes, Research Fellow in Biostatistics<br /> <br /> === Day 10 June 24 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-ZUxZTDNQM0pMTG8 Career Journey and A Principal Approach to Dimensionality Reduction Part 1 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eHY1VlZpY2lDVm8 Career Journey and A Principal Approach to Dimensionality Reduction Part 2 (slides)] - Stephen Gliske, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-eW5CWU1oSzdoZms Career Journey and A Principal Approach to Dimensionality Reduction Part 3 (slides)] - Stephen Gliske, PhD<br /> <br /> === Day 11 June 27 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ece7f762-1464-4e4d-8e50-6993e47ab8e5 Large Scale Optimization Part 1 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ebc69ff7-50e4-42de-84a7-f71942b80672 link Causal Inference (audio)] - Lu Wang, PhD<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-dWJodW9EbnppWWc Likelihood Functions and Parameter Estimation (slides)] - Matthew Zawistowski, Research Specialist at the University of Michigan<br /> <br /> === Day 12 June 28 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=74a7cc61-105e-49c2-96c3-fb8f722d4df6 Large Scale Optimization Part 2 (slides &amp; audio)] - Tewari Ambuj, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a2c39a2f-60ea-48b8-bf03-b113badccfd8 Sequential Decision Making (slides &amp; audio)] - Tewari Ambuj, PhD<br /> <br /> === Day 13 June 29 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VzJpT3VDbER3ZVk R - dplyr (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-a1dtOU5nR1ZVLVU R - Troubleshooting (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 14 June 30 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fb005027-9add-4dce-8691-686a110bd0cb Clustering: Graphical Models and Sampling Algorithm Part 1 (slides &amp; audio)] - Long Nguyen, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6ebca2f7-02af-4b35-a6c6-e5e693898fdb Clustering: Graphical Models and Sampling Algorithm Part 2 (slides &amp; audio)] - Long Nguyen, PhD<br /> <br /> === Day 15 July 1 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a3a3f2a9-ad14-4561-aaf6-f2ad50646b28 My SMART Journey (slides &amp; audio)] - Kelley Kidwell, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f3924785-412f-4fa4-a763-9991cae5abf2 My Spatial Journey to UM Biostatistics (slides &amp; audio)] - Veronica Berrocal, PhD<br /> <br /> === Day 17 July 5 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=63727adf-6c0d-41fa-aab6-649583ada3ca Supervised Machine Learning (slides &amp; audio)] - Hui Jiang, PhD<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2ef517f5-bcf4-4656-b437-b8bd277a1a52 Intro to Bayes (slides &amp; audio)] - Bhramar Mukherjee, PhD<br /> <br /> === Day 18 July 6 ===<br /> * [https://drive.google.com/open?id=0B2ht_TCS6xC-VU9uSTh1ZmRlUlE R Data Visualization (slides)] - Matthew Flickinger, Senior Analyst at the University of Michigan<br /> <br /> === Day 19 July 7 ===<br /> * [https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bce833e7-f85b-4093-930e-69d53d7a84aa Bayes Computing Part 1 (slides &amp; audio)] - Tim Johnson, PhD<br /> * [http://www.example.com link title]<br /> <br /> === Day 20 July 8 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 21 July 11 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 22 July 12 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 23 July 13 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 24 July 14 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 25 July 15 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 26 July 18 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> === Day 27 July 19 ===<br /> * [http://www.example.com link title]<br /> * [http://www.example.com link title]<br /> <br /> == Getting started ==<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:Configuration_settings Configuration settings list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Manual:FAQ MediaWiki FAQ]<br /> * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]<br /> * [//www.mediawiki.org/wiki/Special:MyLanguage/Localisation#Translation_resources Localise MediaWiki for your language]</div>

Sevigny