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==== Day 12: June 21 ====
 
==== Day 12: June 21 ====
*[ Academic Presentations (Slides & Audio)] - Sebastian Zoellner, PhD
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=6e008cf9-a0f6-43d3-bc0a-52728eb4c8fd Academic Presentations (Slides & Audio)] - Sebastian Zoellner, PhD
*[ Programming Workshop ()] - Hyun Min Kang, PhD
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=8fe0ce79-8f40-4829-aa63-a93d4fd7655e Programming Workshop (Slides & Audio)] - Hyun Min Kang, PhD
*[ Goncalo Abecasis Journey (Slides & Audio)] - Goncalo Abecasis, PhD
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=c20210bb-7530-4b2a-9349-1e9d063f0c3d Goncalo Abecasis Journey (Slides & Audio)] - Goncalo Abecasis, PhD
  
 
==== Day 13: June 22 ====
 
==== Day 13: June 22 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f7d703a3-85bd-4dd4-9f0b-01ce716d7b1e Network Models (Slides & Audio)] - Zhenke Wu, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=03da8934-9104-40cb-9eeb-06b4378574cd Distributed Computing (Slides & Audio)] - Harsha Madhyastha, PhD
  
 
==== Day 14: June 23 ====
 
==== Day 14: June 23 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=44b0ccd7-1990-4111-8f33-94603359c0ca Preparing for Graduate School (Slides & Audio)] - Kelley Kidwell, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ec37c259-0468-4a10-bf2d-78aa00b4a8d3 Michael Boehnke Journey (Slides & Audio)] - Michael Boehnke, PhD
  
 
=== <u>Week 4</u> ===
 
=== <u>Week 4</u> ===
  
 
==== Day 15: June 26 ====
 
==== Day 15: June 26 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1678f2b7-8101-4761-9cba-f87235c03c1c Visualization 1 (Audio)] - Matthew Kay, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=8c4938bc-52cf-4227-8bb3-ec0172af6ff8 Visualization 2 (Audio)] - Matthew Kay, PhD
  
 
==== Day 16: June 27 ====
 
==== Day 16: June 27 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=16f41a05-d5ad-49de-9cd2-23a13b97e72b Data Visualization in R (Slides & Audio)] - Matthew Flickinger, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=276dd06a-1c90-49f0-8c0d-3456a43309ce Introduction to Bayes (Slides & Audio)] - Bhramar Mukherjee, PhD
  
 
==== Day 17: June 28 ====
 
==== Day 17: June 28 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=b55f5dee-c023-4bd9-92be-f2b9366f6c89 Leveraging Skills and Deficits in Application Essays (Slides & Audio)] - Brett Griffiths, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ae392bbb-e9e2-43cf-ad2f-30928a7bb227 Programming Workshop (Audio)] - Hyun Min Kang, PhD
  
 
==== Day 18: June 29 ====
 
==== Day 18: June 29 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=192c6641-7239-49be-8e39-0b61176b2b06 Optimization (Slides & Audio)] - Ambuj Tewari, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9dce3ae7-cf58-4cf9-aefb-27535e226427 Bayes Computation (Slides & Audio)] - Veronica Berrocal, PhD
  
 
==== Day 19: June 30 ====
 
==== Day 19: June 30 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1551f3ce-a27e-4986-9927-4b001b0f3136 Writing from Point A to Point D: Simple Strategies for Conveying Complex Ideas (Slides & Audio)] - Brett Griffiths, PhD
  
 
=== <u>Week 5</u> ===
 
=== <u>Week 5</u> ===
  
 
==== Day 20: July 3 ====
 
==== Day 20: July 3 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=49ae869b-619d-4b30-97c2-14bab1d4089e Bayes Computation 2 (Slides & Audio)] - Jian Kang, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=edde6452-994b-4a06-9629-03e01ec2b263 Data Mining 1 (Slides & Audio)] - Kayvan Najarian, PhD
  
 
==== Day 22: July 5 ====
 
==== Day 22: July 5 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=936cb1cb-ee16-4940-b186-94e9382ad19f Large Scale Optimization (Slides & Audio)] - Ambuj Tewari, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=99a57292-5132-4f7f-8377-c77d0ae2b126 Data Mining 2 (Slides & Audio)] - Kayvan Najarian, PhD
  
 
==== Day 23: July 6 ====
 
==== Day 23: July 6 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=22c901b9-6d8b-420a-9c79-0fe3fbef0711 Python Workshop (Audio)] - Arya Farahi
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=15ae6180-0326-406b-9eae-514fe1980b5f Learning Health Systems (Audio)] - Karandeep Singh, MD
  
 
==== Day 24: July 7 ====
 
==== Day 24: July 7 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=13579e7e-c218-476b-ab8a-1a170e1bc6f8 CV/ Resume Workshop (Slides & Audio)] - Tara Allendorfer
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0bf77b6c-dd08-4ab5-8bc3-052ea1a441c0 Brisa Sanchez Journey (Slides & Audio)] - Brisa Sanchez, PhD
  
 
=== <u>Week 6</u> ===
 
=== <u>Week 6</u> ===
  
 
==== Day 25: July 10 ====
 
==== Day 25: July 10 ====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=31b236a4-692c-4408-8621-371f2df5d13f Case Study: Estimating AutoAntibody Signatures to Detect Autoimmune Disease Patient Subsets (Slides & Audio)] - Zhenke Wu, PhD
  
 
==== Day 26: July 11 ====
 
==== Day 26: July 11 ====
 
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4c21b880-c330-4269-86a9-79b91c46f0d9 Case Study: Mixture Models for Sequence Contamination and Single Cell Transcriptions (Slides & Audio)] - Hyun Min Kang, PhD
==== Day 27: July 12 ====
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bfea2bb8-b4ce-4841-9d7c-2bf808aa1ba5 Case Studies: "Posterior Mean Screening for Scalar-on-Image Regression"; "Bayesian Computation for Log Gaussian Cox Processes with Application to Neuroimaging" (Slides & Audio)] - Jian Kang, PhD; Tim Johnson, PhD
  
 
== Symposium ==
 
== Symposium ==
 +
'''Student Group Presentations'''
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-WFNPZzd5TndqZ0U/view?usp=sharing Data Mining/ Machine Learning]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-S2xrUFM0ZEI3dGM/view?usp=sharing Electronic Health Records (EHR)]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NEZ1YnQyVW0tREE/view?usp=sharing Genomics]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-cDVJNUtIcjRjcFE/view?usp=sharing Imaging]
  
'''Student Group Presentations'''
 
  
 
'''Student Poster Presentations'''
 
'''Student Poster Presentations'''
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-Zm5RWHByeWdUd2M/view?usp=sharing A Time-to-Event Analysis of Heart Failure via Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-UEIwRVNZaVJXRFk/view?usp=sharing Melanoma Detection by Classifying Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VEk4RExSSkV3NGM/view?usp=sharing Classifying Skin Lesions Images Using Adaptive Boosting]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-RDR1UmtsV3hFUVk/view?usp=sharing Machine Learning Classification of Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-YWs0alJGdTA3UE0/view?usp=sharing Genomics: Genome Storage and Assembly]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-SU1KWFdPcWZzMEk/view?usp=sharing Predicting the Transcriptome from the Genome]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VGhDZlZZeHAyRDQ/view?usp=sharing Classification of Cell Types from Peripheral Mononuclear Blood Cells]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-bzRTUTlQek9JRGM/view?usp=sharing EHR-Based Study of Long-Term Infectious Diseases]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VjRsZkJfalVNbVk/view?usp=sharing Visualizing Lab and Phenotype Associations Using PheWAS and Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NXJoemNibTFxZXc/view?usp=sharing Data Mining: Microenvironment Microarray Spot Based Approach for Cell Prediction]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VDdJQmtOZHR6RE0/view?usp=sharing Estimating Cell Growth with Machine Learning and Data Mining]
  
 
== Additional Resources ==
 
== Additional Resources ==
 
* [[DataCamp Resources]]
 
* [[DataCamp Resources]]

Latest revision as of 11:06, 8 August 2017

Welcome to the U-M Big Data Summer Institute 2017 Wiki!

Consult the User's Guide for information on using the wiki software.

Reading Material

Data Mining / Machine Learning Group

EHR Group

Papers

Genomics Group

Papers

Methods for genome-wide association studies (GWAS)
DNA sequencing and De-novo assembly
Single Cell RNA Sequencing
Prediction of Gene Expression and/or Complex Phenotypes

Online videos to better understand genetics and genomics

Genetics
Useful 3D Animations
Gene Regulation and Epigenetics
Sequencing Technologies

Imaging Group

2017 Presentations

Week 1

Day 1: June 6

Day 2: June 7

Day 3: June 8

Day 4: June 9

Week 2

Day 5: June 12

Day 6: June 13

Day 7: June 14

Day 8: June 15

Day 9: June 16

Week 3

Day 10: June 19

Day 11: June 20

Day 12: June 21

Day 13: June 22

Day 14: June 23

Week 4

Day 15: June 26

Day 16: June 27

Day 17: June 28

Day 18: June 29

Day 19: June 30

Week 5

Day 20: July 3

Day 22: July 5

Day 23: July 6

Day 24: July 7

Week 6

Day 25: July 10

Day 26: July 11

Symposium

Student Group Presentations


Student Poster Presentations

Additional Resources