Difference between revisions of "Main Page"

From U-M Big Data Summer Institute Wiki
Jump to: navigation, search
(→‎Day 2: June 19)
 
(96 intermediate revisions by 2 users not shown)
Line 6: Line 6:
  
 
=== Data Mining Group ===
 
=== Data Mining Group ===
−
 
 
====Papers ====
 
====Papers ====
 
*[https://drive.google.com/file/d/1UqhVbAUzIdepGyMQBdkjb77kHdME0TL2/view?usp=sharing Data Instructions]
 
*[https://drive.google.com/file/d/1UqhVbAUzIdepGyMQBdkjb77kHdME0TL2/view?usp=sharing Data Instructions]
 +
====HTML Slides ====
 +
*[https://drive.google.com/file/d/1F-GsnlS4ipQvmOOgKua-KAaaMH1oE7pm/view?usp=sharing 6.19 Slides]
 +
*[https://drive.google.com/file/d/1Hw_lDLxsQFCjklGOlS3RSFDPX6Kn1r4A/view?usp=sharing 6.20 Slides]
 +
*[https://drive.google.com/file/d/16svlI9Hb90jaGt3TTKDRB6SvYEdbMl6w/view?usp=sharing 6.21 Slides]
 +
*[https://drive.google.com/file/d/1_1YKi48Gx2pO71OnuR9DFJQYDJHitA3j/view?usp=sharing 6.22 Slides]
 +
*[https://drive.google.com/file/d/1zRW7VVTgpEoIIuiEzSa1MyJ_QtNC0GKA/view?usp=sharing 6.27 Slides]
 +
*[https://drive.google.com/file/d/170fTV11eeGP6oi6CTp-YESJFGcAKBJRl/view?usp=sharing 6.28 Slides]
 +
*[https://drive.google.com/file/d/1WHg5fZnFy0QFbM-tBkzo0BP4-2RR1I8K/view?usp=sharing 7.2 Slides]
 +
*[https://drive.google.com/file/d/1_Kg-Zjdb1uezb445pb8wZ1ty2JwN5Z3C/view?usp=sharing 7.9 Slides]
 +
*[https://drive.google.com/file/d/1Jgw2NgYbkY0U9gQc9dUl5BTcDUfXCX5o/view?usp=sharing 7.10 Slides]
 +
*[https://drive.google.com/file/d/1i3A8xI2bKjLE8ZrJHTm-CeWrGfSZo4iQ/view?usp=sharing 7.11 Slides]
 +
*[https://drive.google.com/file/d/1GfTMXiXriOJQhpIErcHejBR0xPPgxj9K/view?usp=sharing BDSI Classification 1]
 +
*[https://drive.google.com/file/d/1GfTMXiXriOJQhpIErcHejBR0xPPgxj9K/view?usp=sharing BDSI Classification 2]
  
 
=== Machine Learning Group ===
 
=== Machine Learning Group ===
 +
====Research Lecture Slides ====
 +
*[https://drive.google.com/file/d/1HF9cD0cnBEShUVn2Lq9vQYpRxT2ZZ8DJ/view?usp=sharing Introduction]
 +
*[https://drive.google.com/file/d/1LdxCkiFDmWGHcBYsHUw_W54cM6RETp8T/view?usp=sharing Explore MIMIC]
 +
*[https://drive.google.com/file/d/15yChJcEgzHjrn_bhYF7wqaaLh5NMCkzA/view?usp=sharing Getting x and y]
 +
*[https://drive.google.com/file/d/17BCOb3-t5ZJ3eE0Yy9rjlOGn0cn36PUp/view?usp=sharing Some tips]
 +
*[https://drive.google.com/file/d/1T8PEwWfi7PA8uMnuA9_kF6BSz69A6VKM/view?usp=sharing Sample Pipeline]
 +
*[https://drive.google.com/file/d/1OBckV_yjuYrl36tOF1lAKiOcWJA8-q34/view?usp=sharing Training Pipleline]
 +
*[https://drive.google.com/file/d/1i1nel98HYV1mSpro5SaDoMdOqMH5i5Gr/view?usp=sharing CNN]
 +
*[https://drive.google.com/file/d/1y14n4kl9u4LBQ9M5AnP6knFZpfwgOUAW/view?usp=sharing LSTM]
 +
*[https://drive.google.com/file/d/1XF-P43lIhYXU0HnS0pyGrIvPzF4HiB0B/view?usp=sharing Structuring]
 +
*[https://drive.google.com/file/d/12HgspYuZAVVSU49c8AEs8FPqZyoF3c1E/view?usp=sharing Dataset and DataLoader]
 +
*[https://drive.google.com/file/d/1vnUj-Stf5arWNyLguCPuCm1OYRwZGGr1/view?usp=sharing pytorch models]
 +
*[https://drive.google.com/file/d/1-r9sC3GMH_qVL3SCsPBgkDh9upS3hfEM/view?usp=sharing Model Development]
 +
*[https://drive.google.com/file/d/1n2md6F3XQ85WOgMV_20G_DgFqmmBgU3k/view?usp=sharing Population]
 +
*[https://drive.google.com/file/d/1HEAWEbwP7R1o-UZ1NcrMp2C0Ub3ivAzK/view?usp=sharing Benchmark Features]
 +
*[https://drive.google.com/file/d/1QpFDYzmyQBvvT9tk4Nr7EYIbh8mMmMOr/view?usp=sharing Inclusion Exclusion]
 +
====Lecture Notes====
 +
*[https://drive.google.com/file/d/1ogusN8iQqfEfmarjKUqKtFZaSX-LZw3k/view?usp=sharing Recurrent Neural Networks]
 +
*[https://drive.google.com/file/d/11sJeWngMmTpX_PWcobdxX180_xEzOfV-/view?usp=sharing Convolutional Neural Networks]
 +
*[https://drive.google.com/file/d/17m8Y5DcmJCeHgB1spA_b27WYJvzyhLi4/view?usp=sharing Deep Learning]
 +
*[https://drive.google.com/open?id=19qcnGMIdoYZ9mvPwsU2kAvZcqArmd6oO BDSI Lecture]
 +
*[https://drive.google.com/open?id=1gZtk4LjLDcdUSBEsNZ1qTJ2UHRDL--JO Flux Guide]
 +
*[https://drive.google.com/open?id=1XDX7hkicATX0y7cVDb9PDCsPZo1gLdPi Python Guide]
 +
*[https://drive.google.com/open?id=1kueXa-kFk6DiKVqItTEL-sFT_xmHg9Fb Python Tutorial]
 +
====Readings====
 +
*[https://drive.google.com/file/d/1dvEdmapBY-jgdLOCZLdPwDgbybTWEni9/view?usp=sharing ARF Epidemiology]
 +
*[https://drive.google.com/file/d/1EzJxIVlXgkGGge20eHGC5HGtl-E7CPO_/view?usp=sharing CNN for Sentence Clarification]
 +
*[https://drive.google.com/file/d/1rdUGIYh7WkI4qbaJEQjaIXxaXtYYDvQN/view?usp=sharing Learning from Heterogenous Temporal Data]
 +
*[https://drive.google.com/file/d/12aIplGTH982iBvR7Kao6UBk2lY9Q3311/view?usp=sharing MIMC 3]
 +
*[https://drive.google.com/file/d/1jQVuZfnbrxzu79ujr_uKYQGvJVmkoJGy/view?usp=sharing MIMIC Benchmarks and Multitask RNN]
 +
*[https://drive.google.com/file/d/1uh5U_-3NIoUUM7aItA39iTGNkgwI01M7/view?usp=sharing RNNs for Multivariate Time Series]
 +
*[https://drive.google.com/file/d/1r1y4gez3o46mbqkaWP3umHJv6o6uvzf-/view?usp=sharing TREWScore for Septic Shock]
 +
*[https://drive.google.com/file/d/1EZnegIgxpmKNLorKwtkh8Veh5kIJu-lV/view?usp=sharing TREWScore Supplement]
  
 
=== Genomics Group ===
 
=== Genomics Group ===
 +
 +
===== Lectures =====
 +
*[https://drive.google.com/open?id=19jBLxGLRKtJD-5Id-H3d0AK0Vu_dfGko BDSI Genomics Intro]
 +
*[https://drive.google.com/file/d/1nZkKKbwgRWkfEeyEGzsueJ8Dh_Zjahpv/view?usp=sharing PopGen Intro]
 +
 +
===== Intro Exercises =====
 +
*[https://drive.google.com/open?id=1Wl1JensClieYfVNIcTWzJVxN_N7Tugte Single Cell Exercise]
 +
*[https://drive.google.com/open?id=18yGPNL0ZhxJR6Rya4K1IDnH1E8Yz6sjS Single Cell R Code]
 +
*[https://drive.google.com/file/d/1hFlCoxcw758XGfm_LrY6T9kuH6c0R6pJ/view?usp=sharing Intro Integrative]
  
 
===== Papers =====
 
===== Papers =====
Line 23: Line 77:
 
*[https://drive.google.com/file/d/1Tzv1s58R0GVJBS0xYi2RiSYb4al25go_/view?usp=sharing Macosko_MouseRetinaDropSeq]
 
*[https://drive.google.com/file/d/1Tzv1s58R0GVJBS0xYi2RiSYb4al25go_/view?usp=sharing Macosko_MouseRetinaDropSeq]
 
*[https://drive.google.com/file/d/1vg15r6G7jrXSgZXOxsnWKFwbBQnzr8iB/view?usp=sharing Single cell makes big data]
 
*[https://drive.google.com/file/d/1vg15r6G7jrXSgZXOxsnWKFwbBQnzr8iB/view?usp=sharing Single cell makes big data]
−
======Transciptomics ======
+
======Transcriptomics ======
 
*[https://drive.google.com/file/d/1SctF-SUft870PGg-43caqyN-B9sWxMh_/view?usp=sharing GamazonPrediXCan 2015]
 
*[https://drive.google.com/file/d/1SctF-SUft870PGg-43caqyN-B9sWxMh_/view?usp=sharing GamazonPrediXCan 2015]
 
*[https://drive.google.com/file/d/1ioY2blWyZxDKonibl9baSXHAiUO2jNEU/view?usp=sharing GusevTWAS 2006]
 
*[https://drive.google.com/file/d/1ioY2blWyZxDKonibl9baSXHAiUO2jNEU/view?usp=sharing GusevTWAS 2006]
Line 54: Line 108:
  
 
=== Imaging Group ===
 
=== Imaging Group ===
 +
*[https://drive.google.com/open?id=1FspYcn_B93e1BVQ6Q2QZxGygADd1khD7 Project Description]
 +
*[https://drive.google.com/open?id=1-5F8sTNcoarpDFhLhyt7ETjx6BKqsokW BDSI Imaging R Tutorial]
 +
*[https://drive.google.com/open?id=1Fikr9tXih99FRlNhktWvqi2XQfePRlmJ Imaging R Code]
 +
 
====Papers====
 
====Papers====
 
*[https://drive.google.com/file/d/1rs5SLylP-GwjYxzyUy5W5XmUJuDRZWj4/view?usp=sharing Intro to Radiomics]
 
*[https://drive.google.com/file/d/1rs5SLylP-GwjYxzyUy5W5XmUJuDRZWj4/view?usp=sharing Intro to Radiomics]
Line 66: Line 124:
 
==== Day 1: June 18 ====
 
==== Day 1: June 18 ====
 
*[https://docs.google.com/presentation/d/e/2PACX-1vRQckVN89cMdtjnjaS7_FJ7BJFYvQIHvgUSXw2OTEhRtu56EZ2s9VSgq0I46Dmi7ryfXVmug5a2beLJ/pub?start=false&loop=false&delayms=60000 Welcome Slides 2018] - Bhramar Mukherjee, PhD
 
*[https://docs.google.com/presentation/d/e/2PACX-1vRQckVN89cMdtjnjaS7_FJ7BJFYvQIHvgUSXw2OTEhRtu56EZ2s9VSgq0I46Dmi7ryfXVmug5a2beLJ/pub?start=false&loop=false&delayms=60000 Welcome Slides 2018] - Bhramar Mukherjee, PhD
 +
*[https://drive.google.com/file/d/1JCdOhE7NhhzjPi7ouqEA-ta81TbQBbWW/view?usp=sharing Training for Responsible Conduct in Research] - Bhramar Mukherjee, PhD
 +
*[https://drive.google.com/file/d/1XhTTNyZR_egX4SyPc14E252FB9xTUQ6D/view?usp=sharing BDSIOrientationSupplement] - Bhramar Mukherjee, PhD
 +
*[https://drive.google.com/file/d/1c5ZLytCDbUJ85wracUY5x9x8Xe1cztYW/view?usp=sharing BDSI Event Presentation] - Robert Peng
 +
*[https://drive.google.com/file/d/1362WGLqQJ8mn5HhMmYVpRvqyLfd4XpjS/view?usp=sharing BDSI Life in Ann Arbor] - Stephen Salermo
 +
*[https://drive.google.com/file/d/1LL0_i9jjjSQdIxe-NvWdk_z0MTaesbFJ/view?usp=sharing Al-Marzouki_s05] - The effect of scientific misconduct on the results of clinical trials: A Delphi survey
 +
*[https://drive.google.com/open?id=1I5sMZBIzijzlvi3Xj13WTuS9AzVpa0Sf baggerlycoombes] - Deriving chemosensitivity from cell lines: forensic bioinformatics and reproducible research in high-throughput biology
 +
*[https://drive.google.com/file/d/1YLUlWXPM4w8cqFROmoUj9npt2dJqb8za/view?usp=sharing ethicalguidelines] Ethical Guidelines for Statistical Practice
 +
*[https://drive.google.com/file/d/1Zue_3Lh-RGAwF6EImm-nHC_7oX8KfwlM/view?usp=sharing ODS] - On being a scientist 2009
 +
*[https://drive.google.com/open?id=1i-sktSXggJAeHcKrSSEYGArEJmzle1_Y breiman] - Statistical Modeling: The Two Cultures
 +
*[https://drive.google.com/file/d/1BYU00G8x5U4OW2Qhq6gRLQFSZ8ZYOt11/view?usp=sharing breimaninterview] - A conversation with Leo Breiman
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=7c7f99dc-7179-4420-a583-a903014b92c3 Klemmer Evening Lecture]
  
−
===== Papers =====
 
 
==== Day 2: June 19 ====
 
==== Day 2: June 19 ====
 
*[https://drive.google.com/open?id=1o3HfK3V1V3zoUxzKwEx9d0h_fGAIiP1D Study design and inference. ] - Roderick Little, PhD
 
*[https://drive.google.com/open?id=1o3HfK3V1V3zoUxzKwEx9d0h_fGAIiP1D Study design and inference. ] - Roderick Little, PhD
 +
*[https://drive.google.com/open?id=1XMYhAs8WnxhC4vb7u1Eup4aWh0N-1pH1 Reproducible Research - Jedidiah Carlson]
 +
*[https://drive.google.com/open?id=1vWCGrLCYETLlA3Z_91QLHPtr1b1tmnBq Data Processing] - Jed Carlson
 +
*[https://drive.google.com/file/d/1u0uqMh8I8d7BomHSgKxiGwgnk3PE_aDB/view?usp=sharing cameronpaulingpnas1976] - Supplemental ascorbate in the supportive treatment of cancer: Prolongation of survival times in terminal human cancer.
 +
*[https://drive.google.com/file/d/1ICwXElGosi-at-kxP36nS7Vd0Z3XKQU3/view?usp=sharing comroe1977] - Experimental studies designed to evaluate the management of patients with incurable cancer
 +
*[https://drive.google.com/file/d/1qKKeiQkZQel20OQK-ejhcbpmV8wqwl0E/view?usp=sharing CREAGAN] - Failure of High-Dose Vitamin C therapy to benefit patients with advanced cancer
 +
*[https://drive.google.com/file/d/1IuaVOmt24Sb_OPOfedRz26FOUdakEYzQ/view?usp=sharing neyman34jrss] - On the Two Different Aspects of the Representative Method: The Method of Stratified Sampling and the Method of Purposive Selection
 +
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=142b0ba1-795a-4d9c-9c50-a90400d9f85a Reproducible Research] - J. Carlson
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17e02d6f-b195-4370-a354-a90400f37ff9 Study design and Inference] - R. Little
  
 
==== Day 3: June 20 ====
 
==== Day 3: June 20 ====
 
*[https://drive.google.com/open?id=1OVsi449OGgrKqlnOBBsApizpg9gul-9H Observational Data] - Roderick Little, PhD
 
*[https://drive.google.com/open?id=1OVsi449OGgrKqlnOBBsApizpg9gul-9H Observational Data] - Roderick Little, PhD
 +
*[https://drive.google.com/file/d/1K5UHDWDv_UyhuYUmt-wYtk6LiLT2mmiB/view?usp=sharing castnejm1989] - Preliminary report
 +
*[https://drive.google.com/file/d/1LvFT7OcgPQKdQoqZuH2LPN-if0Mj-BM8/view?usp=sharing Tocainideahj80] - Prophylaxis of ventricular tachyarrythmias
 +
*[https://drive.google.com/file/d/1Xdxds2fQgebLgauzI_Mfvc2tsZrDimHa/view?usp=sharing wakefieldlancet] - Ileal-lymphoid-nodular hyperplasia, non-specific colitis, and pervasive developmental disorder in children
 +
*[https://drive.google.com/open?id=17gGeKY7lj0nE9Z5rVSS1xTgVbKzhV2HH R intro file] -  Matthew Flickinger
 +
*[https://drive.google.com/open?id=1x56tLgsucEp8fZdCyGoZKx2AJiC9cheY R intro Lecture] - Matthew Flickinger
 +
*[https://drive.google.com/open?id=1Lsf3XverXb20zv8uuJiYdGh2qAc04HwZ Linear Algebra] - Klemmer
 +
*[https://drive.google.com/open?id=1AvMWjfQMaDPBe90tLElJqyIEqMQkFXFN Matrix Algebra Lecture] - Klemmer
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=564ba8aa-7e11-4acb-9acc-a90500f3b197 Big Data pt. 2] - Roderick Little, PhD
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=72425167-56ed-4016-a0a3-a905014b2154 Linear Algebra] - Klemmer
  
 
==== Day 4: June 21 ====
 
==== Day 4: June 21 ====
 +
*[https://drive.google.com/file/d/1iihBno6cnaKJD_jy1hZjW55HAZGR-7jz/view?usp=sharing  Linear Regression Slides] - Matthew Zawistowski
 +
*[https://drive.google.com/open?id=1N4DVT3RQfnlWpdLrYs9NyK3bcaQepwqv Logistic Regression Slides] - Matthew Zawistowski
 +
*[https://drive.google.com/file/d/1Is4wRzwpi9qjEgdRLaaiH5pnqAJV952s/view?usp=sharing R dplyr Slides] - Matthew Flickinger
 +
*[https://drive.google.com/file/d/1U_djfdZ1l4Ladh7flByTJt0yBKj2_OBp/view?usp=sharing dplyr R code] - Flickinger
 +
*[https://drive.google.com/file/d/1JajnEQi5V366UYMhHZu9O_Btt9miz0G5/view?usp=sharing dplyr R Flights] - Flickinger
 +
*[https://drive.google.com/file/d/1ytD46IcZbBwZNAORxK_6dbqsDZ_JM7O3/view?usp=sharing dplyr OCSLS] - Flickinger
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=17b825db-efc1-4062-8fd4-a90600d75981 dplyr] - Matthew Flickinger
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=f86c1be8-32ba-427b-82e6-a90600f41994 Logistic Regression] - Matthew Zawistowski
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=e7d5c8c2-5774-46e9-a39e-a906014c1cc4 Linear Regression] - Matthew Zawistowski
  
 
====Day 5: June 22 ====
 
====Day 5: June 22 ====
 +
*[https://drive.google.com/file/d/1zPvY7rTxaZtO4qNazEqM8UD4I3k-r0gS/view?usp=sharing State of Institute Slides] - Bhramar Mukherjee, PhD
 +
*[https://drive.google.com/file/d/1Zf0yIVFTESB1NokCKrAPZRqZ65BeZHiE/view?usp=sharing Big Data 3 Slides] - Roderick Little, PhD
 +
*[https://drive.google.com/file/d/11LnfEnT2po2SLJmodkaQfyrM8vUnjJPf/view?usp=sharing ggPlot 2 Slides] - Matthew Flickinger, PhD
 +
*[https://drive.google.com/file/d/1riMRVCd5_hQQRlGr4F6PkR8L2JIWG25t/view?usp=sharing Dplyr_Sms]
 +
*[https://drive.google.com/file/d/15Qy8K-r1KmpU8elEMIY4a0SUCaOdyo8G/view?usp=sharing ggplot2]
 
*[https://drive.google.com/open?id=11bv6vYqV7NugbRP6668By2F_GB0SRmiX Parameter Estimation] - Roderick Little, PhD
 
*[https://drive.google.com/open?id=11bv6vYqV7NugbRP6668By2F_GB0SRmiX Parameter Estimation] - Roderick Little, PhD
 +
*[https://drive.google.com/file/d/1AxwIOpI9h0iIcJvSJ0mQ7qxt1YTvGjEr/view?usp=sharing Fisher22philtransa] - On the Mathematical Foundations of Theoretical Statistics
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=3af6f347-406f-4d8b-9c0b-a90700f2f700 Parameter Estimation] - Rod Little
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=45312fc9-60b5-41ca-935c-a907011267a4 Journey Lecture] - Sanchez
  
 
=== <u>Week 2</u> ===
 
=== <u>Week 2</u> ===
 
==== Day 6: June 25 ====
 
==== Day 6: June 25 ====
 +
*[https://drive.google.com/file/d/1FBj8Uet0cJ02aMP6MHWvFeOuA2bkim4j/view?usp=sharing Matrix Computations] - Peisong Han
 +
*[https://drive.google.com/file/d/11cgzTqWhq4-voT1zBIMjS2XvGbMFgQR6/view?usp=sharing Model Selection] - Lauren Beesley
 +
*[https://drive.google.com/open?id=145d1lrONgCGX-CO_sx0o1hj5P4CMxg7o Python Lecture 1] - Max Smith
 +
*[https://drive.google.com/file/d/1DUZRkidMf9qhH5pfomY7POcsDrkZ7n8L/view?usp=sharing Python Notebook 1] - Max Smith
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=61694d5a-30a4-41d3-81bc-a90a00d60405 Matrix Computations] - Han
  
 
==== Day 7: June 26 ====
 
==== Day 7: June 26 ====
 +
*[https://drive.google.com/file/d/11cgzTqWhq4-voT1zBIMjS2XvGbMFgQR6/view?usp=sharing Model Selection II] - Lauren Beesley
 +
*[https://drive.google.com/open?id=11LzWvnANtEtKASP0IsDYUuuQw4zhi8WD Machine Learning] - Jenna Wiens
 +
*[https://drive.google.com/file/d/1yyRBiZrI5itTNmPdQBXR66wjC7sEwHzL/view?usp=sharing Python Lecture 2] - Max Smith
 +
*[https://drive.google.com/file/d/1Uk7woOZ-Kyq2nkfNoLxjvG1iB8dnULUb/view?usp=sharing Python Notebook 2] - Max Smith
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=a35972c1-e7f9-40ea-b0b0-a90b00f3c36b Model Selection Lecture Recording]
  
 
==== Day 8: June 27 ====
 
==== Day 8: June 27 ====
 +
*[https://drive.google.com/open?id=1byHN_lXS7FCiLl-qMqjd6HQlsUFVdKo2 Clustering] - Danai Koutra
 +
*[https://drive.google.com/open?id=1z-TFLyWuQ6KqHFk5YZf59ystG6WPzgP2 Machine Learning II] - Jenna Wiens
 +
*[https://drive.google.com/file/d/1vi5ChOdY49GFL4YKWgf1uEztZpx4an5r/view?usp=sharing Python Lecture 3] - Max Smith
 +
*[https://drive.google.com/file/d/1sBh6yue4tQyQYEyJGZgYymCRLLDyCMLE/view?usp=sharing Python Notebook 3] - Max Smith
  
 
==== Day 9: June 28 ====
 
==== Day 9: June 28 ====
 +
*[https://drive.google.com/file/d/1TJnGSuebCW53CPmeMa2LQbeum8mPZu61/view?usp=sharing Casual Interference Slides] - Zhenke Wu
 +
*[https://drive.google.com/file/d/1hj_Kkg3AnmgQktYOua5PcZNE0gb2ldGg/view?usp=sharing Clustering Part 2 Slides] - Danai Koutra
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4c2e8ad3-a066-4186-a5d8-a90d00f3ec3f Interference Lecture Recording] - Wu
  
 
==== Day 10: June 29 ====
 
==== Day 10: June 29 ====
−
 
+
*[https://drive.google.com/file/d/1JcPNpmpy2pMEx4ZDGYrSw9D4OAHAZ2dR/view?usp=sharing R Loops Slides] - Flickinger
 +
*[https://drive.google.com/file/d/1MwFiZdbdsN5LunGuJengUIqW8DC9VNyt/view?usp=sharing dplyr NYC Flights]
 +
*[https://drive.google.com/file/d/16WAFuS6QZLMm3p_wxQR1QUWf8ilWjNB0/view?usp=sharing dplyr OCSLS]
 +
*[https://drive.google.com/file/d/196bEVAtY7pI72UhY_i3BawtMel0zx13C/view?usp=sharing dplyr sms]
 +
*[https://drive.google.com/file/d/1VXohDZ2kVc_zsPaaP2ikTGJXx0oXmcnQ/view?usp=sharing ggplot MPG]
 +
*[https://drive.google.com/file/d/1ALpHsZE3OLSCssBSPmxLFEj0EYMMW90_/view?usp=sharing ggplot NYC Flights]
 +
*[https://drive.google.com/file/d/1BQdcx-nO9DuwTaGbh6j344HUwKh9uJKa/view?usp=sharing R Simulations]
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fe2eaaf5-c6ed-49a2-81ed-a90e00d6637d Reading Like A Scientist] - Griffiths
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=c35e5178-7bde-4f0c-b626-a90e00f3cb3f R and Loops] - Flickinger
  
 
=== <u>Week 3</u> ===
 
=== <u>Week 3</u> ===
 
==== Day 11: July 2 ====
 
==== Day 11: July 2 ====
 +
*[https://drive.google.com/file/d/1pQUltPS9vOortgDoeJ-u-lMSv3Dg0o9H/view?usp=sharing Information Visualization Slides] - Kay
 +
*[https://drive.google.com/file/d/19eonASEWp3gRKiTH8x_NwbYluefaARED/view?usp=sharing Data Mining Slides] - Najarian
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=523fba18-c518-4adb-8a33-a91100d68d51 Data Mining] - Najarian
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=624967a6-e082-4cb4-b762-a91100f3129c Information Visualization] - Kay
  
 
==== Day 12: July 3 ====
 
==== Day 12: July 3 ====
 +
*[https://drive.google.com/file/d/16EFWt1-YRVYZ-CPdjU1bBPdEOICgEqwz/view?usp=sharing Data Mining 2 Slides] - Najarian
 +
*[https://drive.google.com/file/d/13W4pfNnQ6bpKkauWbgAt5A2F0aEMDM5k/view?usp=sharing Bayes Slides] - Wen
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d5e31bac-36a4-4fd0-9ea3-a91200d65459 Data Mining 2] - Najarian
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=b25cbf29-0c99-4923-8ff7-a91200f2ea45 Bayesian Statistics] - Wen
  
 
==== Day 13: July 4 (NO CLASS) ====
 
==== Day 13: July 4 (NO CLASS) ====
  
 
==== Day 14: July 5 ====
 
==== Day 14: July 5 ====
 +
*[https://drive.google.com/file/d/1mU0TRlGd_26eXJySxp3Q8K3ZNJXP4iKv/view?usp=sharing Bayes Slides 2] - Wen
 +
*[https://drive.google.com/file/d/1SsI4RNYAfCLSbI1vrwvm6WW6V8DfhvV3/view?usp=sharing Information Visualization 2 Slides] - Kay
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d1348177-aee8-4b8a-ab1b-a91400d78ef2 Information Visualization 2] - Kay
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4c70691f-4af6-4378-81e2-a91400e576d9 Information Visualization 2 Contd.] - Kay
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=dbdfc02a-fa2a-41d0-9f38-a91400f301c3 Bayesian Statistics 2] - Wen
  
 
==== Day 15: July 6 ====
 
==== Day 15: July 6 ====
−
 
+
*[https://drive.google.com/file/d/1Vrs7fAuqH8t3GHc8peDLlkL2MuPabKrX/view?usp=sharing Grad School Slides] - Kidwell
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=9f0b4930-ae0b-4b46-90ac-a91500d736b4 Grad School] - Kidwell
  
 
=== <u>Week 4</u> ===
 
=== <u>Week 4</u> ===
 
==== Day 16: July 9 ====
 
==== Day 16: July 9 ====
−
 
+
*[https://drive.google.com/file/d/1rf01mdHYE7Yr_fuxVy-StcdUq8AkEL-P/view?usp=sharing Troubleshooting R Slides] - Flickinger
 +
*[https://drive.google.com/file/d/1liiNZJNO-qlNgzUbYdgzASnJbpUfi9_C/view?usp=sharing Troubleshooting R code] - Flickinger
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=b5ddefb5-2e4f-4139-abff-a91800d6d08a Computing] - Sun
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=2cb79238-aeff-4e8c-890c-a91800f2fff6 Troubleshooting R] - Flickinger
 
==== Day 17: July 10 ====
 
==== Day 17: July 10 ====
−
 
+
*[https://drive.google.com/file/d/1Nk0uNN-7VDuXzIftHFpripcNNkAvEY0P/view?usp=sharing Bayesian Data Analysis] - Chen
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bacd91ab-2cc9-4695-a26a-a91900d8e1d2 Bayesian Data Analysis pt 1] - Chen
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=34af7429-ee17-4641-8be4-a91900f30839 Bayesian Data Analysis pt 2] - Chen
 
==== Day 18: July 11 ====
 
==== Day 18: July 11 ====
−
 
+
*[https://drive.google.com/file/d/1Ycn2inNz8vgl8WqlLvjl93dKh_G0gXec/view?usp=sharing Quinn Research Slides] - Quinn
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=61c8da1d-2532-4e31-a97a-a91a00f33b66 Qunn Lecture] - Quinn
 
==== Day 19: July 12 ====
 
==== Day 19: July 12 ====
 +
*[https://drive.google.com/file/d/1YfvcL0-nPdajVxQSqwfz8p1rUtfpeygN/view?usp=sharing Predictive Analytics Slides] - Denton
  
 
==== Day 20: July 13 ====
 
==== Day 20: July 13 ====
−
 
+
*[https://drive.google.com/file/d/1OCKujwZEXYVfyxgsmibwpJvnezwHPiZw/view?usp=sharing Resume/CV Slides] - Forbes
 +
*[https://drive.google.com/file/d/1A6_90NN2kHx6b4go9VB5JWn3VilP4YsL/view?usp=sharing Resume Rubric] - Forbes
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0b4d27bd-a831-4890-b09c-a91c00d84978 Resume/CVs Lecture] - Forbes
  
 
=== <u>Week 5</u> ===
 
=== <u>Week 5</u> ===
 
==== Day 21: July 16 ====
 
==== Day 21: July 16 ====
 +
*[https://drive.google.com/file/d/1bFHy0xIXkfo14UFW_1xNO3cgVmhGV7lI/view?usp=sharing Natural Language Processing Slides] - Karandeep
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=64bed0b1-05b0-434d-9391-a91f00d7c476 Natural Language Processing Lecture] - Karandeep
  
 
==== Day 22: July 17 ====
 
==== Day 22: July 17 ====
 +
*[https://drive.google.com/file/d/1e5k7N4sxRQe7cO5GM9PWZkeXrBK-Vlu0/view?usp=sharing Optimization] - Jiang
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fd5c0ca6-e387-48e0-8109-a92000d902ae Optimization Lecture] - Jiang
  
 
==== Day 23: July 18 ====
 
==== Day 23: July 18 ====
 +
*[https://drive.google.com/file/d/1bvIANAi2QBligYMu5r1zYhElmS4KIOc6/view?usp=sharing Scientific Presentations Slides] - Zoellner
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=3790173a-b6db-403b-832b-a92100f32394 Scientific Presentations Lecture] - Zoellner
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4b34ca7b-86c7-4678-b514-a92100d7a146 Pick Me Lecture] - Griffiths
  
 
==== Day 24: July 19 ====
 
==== Day 24: July 19 ====
 +
*[https://drive.google.com/file/d/1jqQ0MiJgYm9bGlXzE5upRKuGLCD7rdyy/view?usp=sharing Epigenomics Slides] - Smith
 +
*[https://drive.google.com/file/d/1EM9pWl2lRZ7d5-zdp0mAtC6vOjCPklPb/view?usp=sharing Epigenomics Reading] - Smith
 +
*[https://drive.google.com/file/d/1zqtg9Zda9GY7_NFIQmgUwlD98nAQjGT-/view?usp=sharing Zhong Research] - Smith
 +
*[https://drive.google.com/file/d/1Bq0tP_VOnB6u3H6xTE_GqAd171PaBTDD/view?usp=sharing Epigenomics Supplementary Tables 1-5] - Smith
 +
*[https://drive.google.com/file/d/1HW_xukUj2KBENKxwmQK_zuAvLNuUNm2a/view?usp=sharing Epigenomics Supplementary Table 6] - Smith
 +
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fcce8e3b-8316-4f9a-a082-a92200d76e40 Epigenomics Lecture] - Smith
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=8d883801-6438-4c67-83dc-a92200f34d6a Social Network Lecture] - Budak
  
 
==== Day 25: July 20 ====
 
==== Day 25: July 20 ====
−
 
+
*[https://drive.google.com/file/d/1J_zJfBR-7KJGL7IjCXwBZOhdvPaCCjDx/view?usp=sharing Mathematical Modeling Slides] - Eisenberg
−
=== <u>Week 6</u> ===
+
*[https://drive.google.com/file/d/1GqsaDfVW7V0Bvn2l5iHXvsSv9SQ_FmwT/view?usp=sharing PolyA Simulation] - Eisenberg
−
==== Day 26: July 23 ====
+
*[https://drive.google.com/file/d/1M2AF0lAjomIpONZcdgWCuJMC-L-MKYc8/view?usp=sharing PolyA R code] - Eisenberg
−
 
+
=====Recorded Lectures=====
−
==== Day 27: July 24 ====
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=dddff986-d7ae-46c9-b14d-a92300d7e0bf Mathematical Modeling Lecture] - Eisenberg
−
 
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=475a0ca7-f65d-4af2-ae73-a92300f39603 Journey Lecture] - Pedro Orozco, BDSI Student Coordinator
−
==== Day 28: July 25 ====
 
  
 
== Day 29: Symposium ==
 
== Day 29: Symposium ==
−
 
+
'''2018 Professor Lectures Presentations'''
−
'''Student Poster Presentations'''
+
*[https://drive.google.com/file/d/19QJ9SmqsCP66urThKu5hlSxZdobyAd7z/view?usp=sharing 2018 Symposium Flyer]
 +
*[https://drive.google.com/file/d/1ukz_fd4kLGR2JaqjbAdFz6HuRmkD9BdM/view?usp=sharing Symposium Welcome Remarks]
 +
*[https://drive.google.com/file/d/1yUAUsxe_aElBdfZDItsdkBFKgJs9Ig8N/view?usp=sharing Calibration Concordance] - Chen
 +
*[https://drive.google.com/file/d/1U8Rt4mDPAmZuqv9RXhsPkMnL1VmoI3G0/view?usp=sharing Data Science and Predictive Health Analytics] - Dinov
 +
*[https://drive.google.com/file/d/118HtI_euaMBmCl7-bibqDYJPRlablmOY/view?usp=sharing Models of Human Choice] - Feinberg
 +
*[https://drive.google.com/file/d/1O3q32tp2J87Tmigz75ozVAonX-YYKwam/view?usp=sharing Linking Tumor with Personalized Medicine] - Rao
 +
*[https://drive.google.com/file/d/1eFBzOkXbNyaP4s0o7kemHVSbhgxfqUmz/view?usp=sharing Humanist Approach to Data Science] - Schutt
 +
*[https://drive.google.com/file/d/1kuDFENM8UwzxL_ve70jwca717RTDjzXA/view?usp=sharing Big Data in the Social Sciences] - Titunik
 +
*[https://drive.google.com/file/d/19bnSFP9xPQg7i6lQ1bdO439Gj7iyf1R9/view?usp=sharing Detecting Epistasis in Large Scale Genetic Mapping] - Zhou
 +
'''2018 Student Poster Presentations'''
 +
*[https://drive.google.com/file/d/1TGNqkCAV9eBJ_-zHbiU-yo3N4Aowm_HB/view?usp=sharing Imaging Group Presentation]
 +
*[https://drive.google.com/file/d/1S01_WV6wfJ6BE2Op-01byw0WFUZadPjR/view?usp=sharing Machine Learning Group Presentation]
 +
*[https://drive.google.com/file/d/1LlZgR4TAlyYaS88bQ6qgZncWFuS0lFuC/view?usp=sharing Genetics Group Presentation]
 +
*[https://drive.google.com/file/d/1HqWZFGjHgIYOoqqlpQxc0qn9y7PTa4hD/view?usp=sharing Data Mining Presentation]
 +
'''2017 Student Poster Presentations'''
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-WFNPZzd5TndqZ0U/view?usp=sharing Data Mining/ Machine Learning]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-S2xrUFM0ZEI3dGM/view?usp=sharing Electronic Health Records (EHR)]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NEZ1YnQyVW0tREE/view?usp=sharing Genomics]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-cDVJNUtIcjRjcFE/view?usp=sharing Imaging]
 +
=====2017 Symposium Reference Files=====
 +
*[https://drive.google.com/file/d/1zwuVp6_sIRIlKx79-i0uZRp6Gtooi6g8/view?usp=sharing 2017 Symposium Program]
 +
*[https://drive.google.com/file/d/18FfpzqxwPSunJfHM3pHDxYYggAPlKgWX/view?usp=sharing 2017 Symposium Flyer]
 +
======2017 Symposium Projects======
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-Zm5RWHByeWdUd2M/view?usp=sharing A Time-to-Event Analysis of Heart Failure via Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-UEIwRVNZaVJXRFk/view?usp=sharing Melanoma Detection by Classifying Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VEk4RExSSkV3NGM/view?usp=sharing Classifying Skin Lesions Images Using Adaptive Boosting]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-RDR1UmtsV3hFUVk/view?usp=sharing Machine Learning Classification of Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-YWs0alJGdTA3UE0/view?usp=sharing Genomics: Genome Storage and Assembly]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-SU1KWFdPcWZzMEk/view?usp=sharing Predicting the Transcriptome from the Genome]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VGhDZlZZeHAyRDQ/view?usp=sharing Classification of Cell Types from Peripheral Mononuclear Blood Cells]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-bzRTUTlQek9JRGM/view?usp=sharing EHR-Based Study of Long-Term Infectious Diseases]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VjRsZkJfalVNbVk/view?usp=sharing Visualizing Lab and Phenotype Associations Using PheWAS and Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NXJoemNibTFxZXc/view?usp=sharing Data Mining: Microenvironment Microarray Spot Based Approach for Cell Prediction]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VDdJQmtOZHR6RE0/view?usp=sharing Estimating Cell Growth with Machine Learning and Data Mining]
  
 
== Additional Resources ==
 
== Additional Resources ==
 
* [[DataCamp Resources]]
 
* [[DataCamp Resources]]
 +
* [[https://drive.google.com/file/d/15pPcBQrTBj9ze9VthpTZLmkEa3yRaz8T/view?usp=sharing Daily Schedule]] - Last update July 3, 2018

Latest revision as of 08:36, 27 July 2018

Welcome to the U-M Big Data Summer Institute 2018 Wiki!

Consult the User's Guide for information on using the wiki software.

Contents

Reading Material

Data Mining Group

Papers

HTML Slides

Machine Learning Group

Research Lecture Slides

Lecture Notes

Readings

Genomics Group

Lectures
Intro Exercises
Papers
Population Genetics
Single Cell RNA
Transcriptomics

Online videos to better understand genetics and genomics

Genetics
Useful 3D Animations
Gene Regulation and Epigenetics
Sequencing Technologies

Imaging Group

Papers

2018 Presentations

Week 1

Day 0: June 17

Day 1: June 18

Recorded Lectures

Day 2: June 19

Recorded Lectures

Day 3: June 20

Recorded Lectures

Day 4: June 21

Recorded Lectures

Day 5: June 22

Recorded Lectures

Week 2

Day 6: June 25

Recorded Lectures

Day 7: June 26

Recorded Lectures

Day 8: June 27

Day 9: June 28

Recorded Lectures

Day 10: June 29

Recorded Lectures

Week 3

Day 11: July 2

Recorded Lectures

Day 12: July 3

Recorded Lectures

Day 13: July 4 (NO CLASS)

Day 14: July 5

Recorded Lectures

Day 15: July 6

Recorded Lectures

Week 4

Day 16: July 9

Recorded Lectures

Day 17: July 10

Recorded Lectures

Day 18: July 11

Recorded Lectures

Day 19: July 12

Day 20: July 13

Recorded Lectures

Week 5

Day 21: July 16

Recorded Lectures

Day 22: July 17

Recorded Lectures

Day 23: July 18

Recorded Lectures

Day 24: July 19

Recorded Lectures

Day 25: July 20

Recorded Lectures

Day 29: Symposium

2018 Professor Lectures Presentations

2018 Student Poster Presentations

2017 Student Poster Presentations

2017 Symposium Reference Files
2017 Symposium Projects

Additional Resources

Retrieved from "http://bigdatasummerinst.sph.umich.edu/wiki2018/index.php?title=Main_Page&oldid=126"