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*[https://drive.google.com/open?id=1XDX7hkicATX0y7cVDb9PDCsPZo1gLdPi Python Guide]
 
*[https://drive.google.com/open?id=1XDX7hkicATX0y7cVDb9PDCsPZo1gLdPi Python Guide]
 
*[https://drive.google.com/open?id=1kueXa-kFk6DiKVqItTEL-sFT_xmHg9Fb Python Tutorial]
 
*[https://drive.google.com/open?id=1kueXa-kFk6DiKVqItTEL-sFT_xmHg9Fb Python Tutorial]
 +
====Readings====
 +
*[https://drive.google.com/file/d/1dvEdmapBY-jgdLOCZLdPwDgbybTWEni9/view?usp=sharing ARF Epidemiology]
 +
*[https://drive.google.com/file/d/1EzJxIVlXgkGGge20eHGC5HGtl-E7CPO_/view?usp=sharing CNN for Sentence Clarification]
 +
*[https://drive.google.com/file/d/1rdUGIYh7WkI4qbaJEQjaIXxaXtYYDvQN/view?usp=sharing Learning from Heterogenous Temporal Data]
 +
*[https://drive.google.com/file/d/12aIplGTH982iBvR7Kao6UBk2lY9Q3311/view?usp=sharing MIMC 3]
 +
*[https://drive.google.com/file/d/1jQVuZfnbrxzu79ujr_uKYQGvJVmkoJGy/view?usp=sharing MIMIC Benchmarks and Multitask RNN]
 +
*[https://drive.google.com/file/d/1uh5U_-3NIoUUM7aItA39iTGNkgwI01M7/view?usp=sharing RNNs for Multivariate Time Series]
 +
*[https://drive.google.com/file/d/1r1y4gez3o46mbqkaWP3umHJv6o6uvzf-/view?usp=sharing TREWScore for Septic Shock]
 +
*[https://drive.google.com/file/d/1EZnegIgxpmKNLorKwtkh8Veh5kIJu-lV/view?usp=sharing TREWScore Supplement]
  
 
=== Genomics Group ===
 
=== Genomics Group ===
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*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bacd91ab-2cc9-4695-a26a-a91900d8e1d2 Bayesian Data Analysis pt 1] - Chen
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=bacd91ab-2cc9-4695-a26a-a91900d8e1d2 Bayesian Data Analysis pt 1] - Chen
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=34af7429-ee17-4641-8be4-a91900f30839 Bayesian Data Analysis pt 2] - Chen
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=34af7429-ee17-4641-8be4-a91900f30839 Bayesian Data Analysis pt 2] - Chen
 
 
==== Day 18: July 11 ====
 
==== Day 18: July 11 ====
 
*[https://drive.google.com/file/d/1Ycn2inNz8vgl8WqlLvjl93dKh_G0gXec/view?usp=sharing Quinn Research Slides] - Quinn
 
*[https://drive.google.com/file/d/1Ycn2inNz8vgl8WqlLvjl93dKh_G0gXec/view?usp=sharing Quinn Research Slides] - Quinn
 
+
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=61c8da1d-2532-4e31-a97a-a91a00f33b66 Qunn Lecture] - Quinn
 
==== Day 19: July 12 ====
 
==== Day 19: July 12 ====
 +
*[https://drive.google.com/file/d/1YfvcL0-nPdajVxQSqwfz8p1rUtfpeygN/view?usp=sharing Predictive Analytics Slides] - Denton
  
 
==== Day 20: July 13 ====
 
==== Day 20: July 13 ====
 +
*[https://drive.google.com/file/d/1OCKujwZEXYVfyxgsmibwpJvnezwHPiZw/view?usp=sharing Resume/CV Slides] - Forbes
 +
*[https://drive.google.com/file/d/1A6_90NN2kHx6b4go9VB5JWn3VilP4YsL/view?usp=sharing Resume Rubric] - Forbes
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0b4d27bd-a831-4890-b09c-a91c00d84978 Resume/CVs Lecture] - Forbes
  
 
=== <u>Week 5</u> ===
 
=== <u>Week 5</u> ===
 
==== Day 21: July 16 ====
 
==== Day 21: July 16 ====
 +
*[https://drive.google.com/file/d/1bFHy0xIXkfo14UFW_1xNO3cgVmhGV7lI/view?usp=sharing Natural Language Processing Slides] - Karandeep
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=64bed0b1-05b0-434d-9391-a91f00d7c476 Natural Language Processing Lecture] - Karandeep
  
 
==== Day 22: July 17 ====
 
==== Day 22: July 17 ====
 +
*[https://drive.google.com/file/d/1e5k7N4sxRQe7cO5GM9PWZkeXrBK-Vlu0/view?usp=sharing Optimization] - Jiang
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fd5c0ca6-e387-48e0-8109-a92000d902ae Optimization Lecture] - Jiang
  
 
==== Day 23: July 18 ====
 
==== Day 23: July 18 ====
 +
*[https://drive.google.com/file/d/1bvIANAi2QBligYMu5r1zYhElmS4KIOc6/view?usp=sharing Scientific Presentations Slides] - Zoellner
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=3790173a-b6db-403b-832b-a92100f32394 Scientific Presentations Lecture] - Zoellner
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=4b34ca7b-86c7-4678-b514-a92100d7a146 Pick Me Lecture] - Griffiths
  
 
==== Day 24: July 19 ====
 
==== Day 24: July 19 ====
 +
*[https://drive.google.com/file/d/1jqQ0MiJgYm9bGlXzE5upRKuGLCD7rdyy/view?usp=sharing Epigenomics Slides] - Smith
 +
*[https://drive.google.com/file/d/1EM9pWl2lRZ7d5-zdp0mAtC6vOjCPklPb/view?usp=sharing Epigenomics Reading] - Smith
 +
*[https://drive.google.com/file/d/1zqtg9Zda9GY7_NFIQmgUwlD98nAQjGT-/view?usp=sharing Zhong Research] - Smith
 +
*[https://drive.google.com/file/d/1Bq0tP_VOnB6u3H6xTE_GqAd171PaBTDD/view?usp=sharing Epigenomics Supplementary Tables 1-5] - Smith
 +
*[https://drive.google.com/file/d/1HW_xukUj2KBENKxwmQK_zuAvLNuUNm2a/view?usp=sharing Epigenomics Supplementary Table 6] - Smith
 +
 +
=====Recorded Lectures=====
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=fcce8e3b-8316-4f9a-a082-a92200d76e40 Epigenomics Lecture] - Smith
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=8d883801-6438-4c67-83dc-a92200f34d6a Social Network Lecture] - Budak
  
 
==== Day 25: July 20 ====
 
==== Day 25: July 20 ====
 
+
*[https://drive.google.com/file/d/1J_zJfBR-7KJGL7IjCXwBZOhdvPaCCjDx/view?usp=sharing Mathematical Modeling Slides] - Eisenberg
=== <u>Week 6</u> ===
+
*[https://drive.google.com/file/d/1GqsaDfVW7V0Bvn2l5iHXvsSv9SQ_FmwT/view?usp=sharing PolyA Simulation] - Eisenberg
==== Day 26: July 23 ====
+
*[https://drive.google.com/file/d/1M2AF0lAjomIpONZcdgWCuJMC-L-MKYc8/view?usp=sharing PolyA R code] - Eisenberg
 
+
=====Recorded Lectures=====
==== Day 27: July 24 ====
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=dddff986-d7ae-46c9-b14d-a92300d7e0bf Mathematical Modeling Lecture] - Eisenberg
 
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=475a0ca7-f65d-4af2-ae73-a92300f39603 Journey Lecture] - Pedro Orozco, BDSI Student Coordinator
==== Day 28: July 25 ====
 
  
 
== Day 29: Symposium ==
 
== Day 29: Symposium ==
 +
'''2018 Professor Lectures Presentations'''
 
*[https://drive.google.com/file/d/19QJ9SmqsCP66urThKu5hlSxZdobyAd7z/view?usp=sharing 2018 Symposium Flyer]
 
*[https://drive.google.com/file/d/19QJ9SmqsCP66urThKu5hlSxZdobyAd7z/view?usp=sharing 2018 Symposium Flyer]
'''Student Poster Presentations'''
+
*[https://drive.google.com/file/d/1ukz_fd4kLGR2JaqjbAdFz6HuRmkD9BdM/view?usp=sharing Symposium Welcome Remarks]
 +
*[https://drive.google.com/file/d/1yUAUsxe_aElBdfZDItsdkBFKgJs9Ig8N/view?usp=sharing Calibration Concordance] - Chen
 +
*[https://drive.google.com/file/d/1U8Rt4mDPAmZuqv9RXhsPkMnL1VmoI3G0/view?usp=sharing Data Science and Predictive Health Analytics] - Dinov
 +
*[https://drive.google.com/file/d/118HtI_euaMBmCl7-bibqDYJPRlablmOY/view?usp=sharing Models of Human Choice] - Feinberg
 +
*[https://drive.google.com/file/d/1O3q32tp2J87Tmigz75ozVAonX-YYKwam/view?usp=sharing Linking Tumor with Personalized Medicine] - Rao
 +
*[https://drive.google.com/file/d/1eFBzOkXbNyaP4s0o7kemHVSbhgxfqUmz/view?usp=sharing Humanist Approach to Data Science] - Schutt
 +
*[https://drive.google.com/file/d/1kuDFENM8UwzxL_ve70jwca717RTDjzXA/view?usp=sharing Big Data in the Social Sciences] - Titunik
 +
*[https://drive.google.com/file/d/19bnSFP9xPQg7i6lQ1bdO439Gj7iyf1R9/view?usp=sharing Detecting Epistasis in Large Scale Genetic Mapping] - Zhou
 +
'''2018 Student Poster Presentations'''
 +
*[https://drive.google.com/file/d/1TGNqkCAV9eBJ_-zHbiU-yo3N4Aowm_HB/view?usp=sharing Imaging Group Presentation]
 +
*[https://drive.google.com/file/d/1S01_WV6wfJ6BE2Op-01byw0WFUZadPjR/view?usp=sharing Machine Learning Group Presentation]
 +
*[https://drive.google.com/file/d/1LlZgR4TAlyYaS88bQ6qgZncWFuS0lFuC/view?usp=sharing Genetics Group Presentation]
 +
*[https://drive.google.com/file/d/1HqWZFGjHgIYOoqqlpQxc0qn9y7PTa4hD/view?usp=sharing Data Mining Presentation]
 +
'''2017 Student Poster Presentations'''
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-WFNPZzd5TndqZ0U/view?usp=sharing Data Mining/ Machine Learning]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-S2xrUFM0ZEI3dGM/view?usp=sharing Electronic Health Records (EHR)]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NEZ1YnQyVW0tREE/view?usp=sharing Genomics]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-cDVJNUtIcjRjcFE/view?usp=sharing Imaging]
 +
=====2017 Symposium Reference Files=====
 +
*[https://drive.google.com/file/d/1zwuVp6_sIRIlKx79-i0uZRp6Gtooi6g8/view?usp=sharing 2017 Symposium Program]
 +
*[https://drive.google.com/file/d/18FfpzqxwPSunJfHM3pHDxYYggAPlKgWX/view?usp=sharing 2017 Symposium Flyer]
 +
======2017 Symposium Projects======
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-Zm5RWHByeWdUd2M/view?usp=sharing A Time-to-Event Analysis of Heart Failure via Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-UEIwRVNZaVJXRFk/view?usp=sharing Melanoma Detection by Classifying Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VEk4RExSSkV3NGM/view?usp=sharing Classifying Skin Lesions Images Using Adaptive Boosting]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-RDR1UmtsV3hFUVk/view?usp=sharing Machine Learning Classification of Skin Lesion Images]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-YWs0alJGdTA3UE0/view?usp=sharing Genomics: Genome Storage and Assembly]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-SU1KWFdPcWZzMEk/view?usp=sharing Predicting the Transcriptome from the Genome]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VGhDZlZZeHAyRDQ/view?usp=sharing Classification of Cell Types from Peripheral Mononuclear Blood Cells]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-bzRTUTlQek9JRGM/view?usp=sharing EHR-Based Study of Long-Term Infectious Diseases]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VjRsZkJfalVNbVk/view?usp=sharing Visualizing Lab and Phenotype Associations Using PheWAS and Electronic Health Records]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-NXJoemNibTFxZXc/view?usp=sharing Data Mining: Microenvironment Microarray Spot Based Approach for Cell Prediction]
 +
*[https://drive.google.com/file/d/0B2ht_TCS6xC-VDdJQmtOZHR6RE0/view?usp=sharing Estimating Cell Growth with Machine Learning and Data Mining]
  
 
== Additional Resources ==
 
== Additional Resources ==
 
* [[DataCamp Resources]]
 
* [[DataCamp Resources]]
 
* [[https://drive.google.com/file/d/15pPcBQrTBj9ze9VthpTZLmkEa3yRaz8T/view?usp=sharing Daily Schedule]] - Last update July 3, 2018
 
* [[https://drive.google.com/file/d/15pPcBQrTBj9ze9VthpTZLmkEa3yRaz8T/view?usp=sharing Daily Schedule]] - Last update July 3, 2018

Latest revision as of 09:36, 27 July 2018

Welcome to the U-M Big Data Summer Institute 2018 Wiki!

Consult the User's Guide for information on using the wiki software.

Contents

Reading Material

Data Mining Group

Papers

HTML Slides

Machine Learning Group

Research Lecture Slides

Lecture Notes

Readings

Genomics Group

Lectures
Intro Exercises
Papers
Population Genetics
Single Cell RNA
Transcriptomics

Online videos to better understand genetics and genomics

Genetics
Useful 3D Animations
Gene Regulation and Epigenetics
Sequencing Technologies

Imaging Group

Papers

2018 Presentations

Week 1

Day 0: June 17

Day 1: June 18

Recorded Lectures

Day 2: June 19

Recorded Lectures

Day 3: June 20

Recorded Lectures

Day 4: June 21

Recorded Lectures

Day 5: June 22

Recorded Lectures

Week 2

Day 6: June 25

Recorded Lectures

Day 7: June 26

Recorded Lectures

Day 8: June 27

Day 9: June 28

Recorded Lectures

Day 10: June 29

Recorded Lectures

Week 3

Day 11: July 2

Recorded Lectures

Day 12: July 3

Recorded Lectures

Day 13: July 4 (NO CLASS)

Day 14: July 5

Recorded Lectures

Day 15: July 6

Recorded Lectures

Week 4

Day 16: July 9

Recorded Lectures

Day 17: July 10

Recorded Lectures

Day 18: July 11

Recorded Lectures

Day 19: July 12

Day 20: July 13

Recorded Lectures

Week 5

Day 21: July 16

Recorded Lectures

Day 22: July 17

Recorded Lectures

Day 23: July 18

Recorded Lectures

Day 24: July 19

Recorded Lectures

Day 25: July 20

Recorded Lectures

Day 29: Symposium

2018 Professor Lectures Presentations

2018 Student Poster Presentations

2017 Student Poster Presentations

2017 Symposium Reference Files
2017 Symposium Projects

Additional Resources