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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d3e590db-bfe9-4ab5-91b1-aa7300f2ee1f R Workshop dplyr Part II] - Flickinger
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=d3e590db-bfe9-4ab5-91b1-aa7300f2ee1f R Workshop dplyr Part II] - Flickinger
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=399865c6-35b3-4eb1-8f36-aa73010fd4ba Journey Lecture] - Mike
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=399865c6-35b3-4eb1-8f36-aa73010fd4ba Journey Lecture] - Boehnke
 
* No Recording Available (Data Wrangling in R with dplyr - Flickinger)
 
* No Recording Available (Data Wrangling in R with dplyr - Flickinger)
  
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*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1f07dda4-81d9-41b0-bd43-aa7900f30d9e Model Selection Part II] - Beesley
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=1f07dda4-81d9-41b0-bd43-aa7900f30d9e Model Selection Part II] - Beesley
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=84588ff1-9cf8-4f44-b1f4-aa79014de845 Assessment of predictive models] - Boonstra
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=84588ff1-9cf8-4f44-b1f4-aa79014de845 Assessment of predictive models] - Boonstra
 +
* No recording available (Unsupervised Learning, Clustering II - Koutra)
  
 
==== Day 10: Python Workshop I and II, June 28 ====
 
==== Day 10: Python Workshop I and II, June 28 ====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=56ea7d1a-d2df-4d2c-a570-aa7d00d6b518 Data Mining Part I] - Gryak
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=56ea7d1a-d2df-4d2c-a570-aa7d00d6b518 Data Mining Part I] - Gryak
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=da78299d-aecf-4823-bc5f-aa7d00f39f4b Visualization I] - Matthew Kay
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=da78299d-aecf-4823-bc5f-aa7d00f39f4b Visualization I] - Kay
  
 
==== Day 12: Data Mining II and Precision Health, July 2 ====
 
==== Day 12: Data Mining II and Precision Health, July 2 ====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=393e57a1-b764-49c0-9a77-aa7e00f21944 Precision Health] - Kheterpal
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=393e57a1-b764-49c0-9a77-aa7e00f21944 Precision Health] - Kheterpal
 +
* No recording available (Data Mining II - Gryak)
  
 
==== Day 13: Visualization II and Intro to Bayes I, July 3====
 
==== Day 13: Visualization II and Intro to Bayes I, July 3====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91c1bb99-5542-4086-8389-aa7f00f2dab8 Introduction to Bayes] - Wen
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=91c1bb99-5542-4086-8389-aa7f00f2dab8 Introduction to Bayes] - Wen
 +
* No recording available (Visualization II - Kay)
  
 
==== Day 14: July 4 - NO CLASS ====
 
==== Day 14: July 4 - NO CLASS ====
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*[[Media:Bayes2.pdf|Intro to Bayes II slides]] - Wen
 
*[[Media:Bayes2.pdf|Intro to Bayes II slides]] - Wen
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=279b3f8e-deed-4086-bfab-aa81010fb121 Journey lecture] - Snidgdha
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=279b3f8e-deed-4086-bfab-aa81010fb121 Journey lecture] - Panigrahi
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ded3c71e-7fd3-4b76-a3a5-aa8100d649e9 Introduction to Bayes II] - Wen
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=ded3c71e-7fd3-4b76-a3a5-aa8100d649e9 Introduction to Bayes II] - Wen
 +
* No recording available (Journey Lectures: Taylor)
 +
* No recording available (State of the Institute: Mukherjee)
  
 
=== <u>Week 4</u> ===
 
=== <u>Week 4</u> ===
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*[[Media:BDSI_Lecture_Slides.pdf|Bayes Computation I and II slides]] - Chen
 
*[[Media:BDSI_Lecture_Slides.pdf|Bayes Computation I and II slides]] - Chen
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
*No recordings available (Computation I & II - Chen)
  
 
==== Day 18: Reading Like a Scientific Writer and Social Network, July 10 ====
 
==== Day 18: Reading Like a Scientific Writer and Social Network, July 10 ====
 
*[[Media:Griffiths-BDSI-Reading like a Scientific Writer-2019.pptx|Reading Like a Scientific Writer slides]] - Griffiths
 
*[[Media:Griffiths-BDSI-Reading like a Scientific Writer-2019.pptx|Reading Like a Scientific Writer slides]] - Griffiths
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
* No recording available (Reading like a scientific writer - Griffiths)
 +
* No recording available (Social Network - Adar)
 +
* No recording available (Journey Lecture-Bowman)
  
 
==== Day 19: Stroke Disparities and Human-Centered Computing: Using Speech to Understand Behavior, July 11 ====
 
==== Day 19: Stroke Disparities and Human-Centered Computing: Using Speech to Understand Behavior, July 11 ====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=96a45868-6793-4579-be17-aa8700d6d01f Stroke disparities] - Lisabeth
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=96a45868-6793-4579-be17-aa8700d6d01f Stroke disparities] - Lisabeth
 +
* No recording available (Human-Centered Computing: Using Speech to Understand Behavior - Provost)
  
 
==== Day 20: Spatial Epidemiology, July 12 ====
 
==== Day 20: Spatial Epidemiology, July 12 ====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0f0408ed-8286-4412-8cfc-aa88010ed154 Journey Lecture] - Spino
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=0f0408ed-8286-4412-8cfc-aa88010ed154 Journey Lecture] - Spino
 +
* No recording available (Spatial Epidemiology - Zelner)
 +
* No recording available (State of the Institute - Mukherjee)
  
 
=== <u>Week 5</u> ===
 
=== <u>Week 5</u> ===
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*
 
*
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
*No recording available (Natural Language Processing I & II - Singh)
  
 
==== Day 22: Optimization I and II, July 16 ====
 
==== Day 22: Optimization I and II, July 16 ====
 
*[[Media:bdsi_optimization_2019.pdf|Optimization slides]] - Kang
 
*[[Media:bdsi_optimization_2019.pdf|Optimization slides]] - Kang
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
* No recording available (Optimization I & II - Kang)
  
 
==== Day 23: Writing from Point A to Point B and Bayesian Data Integration and Precision Medicine, July 17 ====
 
==== Day 23: Writing from Point A to Point B and Bayesian Data Integration and Precision Medicine, July 17 ====
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=====Recorded Lectures=====
 
=====Recorded Lectures=====
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=06dc5e25-839e-4ce9-98ab-aa8d00f14531 Data Integration & Precision Medicine] - Baladandayuthapani
 
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=06dc5e25-839e-4ce9-98ab-aa8d00f14531 Data Integration & Precision Medicine] - Baladandayuthapani
 +
* No recording available (Writing from Point A to Point D: Simple Strategies for Conveying Complex Ideas - Griffiths)
  
 
==== Day 24: Radiation Oncology and Imaging Analysis and Optimization in Health, July 18 ====
 
==== Day 24: Radiation Oncology and Imaging Analysis and Optimization in Health, July 18 ====
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*
 
*
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
* No recording available ( Better, Not Just Bigger Data Analytics: Confessions of a Clinical Researcher - Nallamothu)
 +
* No recording available (Journey Lecture - Orozco del Pino)
 +
* No recording available (Journey Lecture - Beesley)
 +
* No recording available (State of the Institute - Zoellner)
  
 
=== <u>Week 6</u> ===
 
=== <u>Week 6</u> ===
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*[[Media:WORD TRICKS AND TIPS.pdf|Word Tricks handout]]
 
*[[Media:WORD TRICKS AND TIPS.pdf|Word Tricks handout]]
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=7a959293-7303-4636-a1ad-aa9500e2a612 CVs & Resumes] - Forbes
 +
*[https://sph.hosted.panopto.com/Panopto/Pages/Viewer.aspx?id=3fecb1a7-af27-4b87-8e6e-aa9500e2afcf Preparing for Grad School] - Kidwell
  
 
==== Day 27: Pick Me!, July 23 ====
 
==== Day 27: Pick Me!, July 23 ====
 
*
 
*
 
=====Recorded Lectures=====
 
=====Recorded Lectures=====
*
+
* No recording available (TBD - Grifftihs)
  
 
== Day 29: Symposium ==
 
== Day 29: Symposium ==
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*
 
*
 
'''2019 Student Poster Presentations'''
 
'''2019 Student Poster Presentations'''
*
+
*[https://umich.app.box.com/s/xwc8ecl2l3gahlpdhobkm0zbx4dvu3qa/file/496616682213 Data Mining Presentation]
 +
*[https://umich.app.box.com/s/xwc8ecl2l3gahlpdhobkm0zbx4dvu3qa/file/496590467731 Machine Learning Presentation]
 +
*[https://umich.app.box.com/s/xwc8ecl2l3gahlpdhobkm0zbx4dvu3qa/file/496560211380 Genomics Presentation]
 
'''2018 Student Poster Presentations'''
 
'''2018 Student Poster Presentations'''
 
*[https://drive.google.com/file/d/1TGNqkCAV9eBJ_-zHbiU-yo3N4Aowm_HB/view?usp=sharing Imaging Group Presentation]
 
*[https://drive.google.com/file/d/1TGNqkCAV9eBJ_-zHbiU-yo3N4Aowm_HB/view?usp=sharing Imaging Group Presentation]

Latest revision as of 12:13, 6 June 2021

Welcome to the U-M Big Data Summer Institute 2019 Wiki!

Contents

Reading Material

Machine Learning Group

Research Lecture Slides

Readings

Genomics Group

Lectures
Intro Exercises
Papers
Population Genetics
Single Cell RNA
Transcriptomics

Online videos to better understand genetics and genomics

Genetics
Useful 3D Animations
Gene Regulation and Epigenetics
Sequencing Technologies

Data Mining on Large Complex Datasets

Papers

2019 Presentations

Week 1

Day 1: RCRS Training, June 17

Recorded Lectures

Day 2: Reproducible Research, Study Design and Inference, and Linear Regression, June 18

Recorded Lectures

Day 3: Logistic Regression, Observational Data and Bias, and Probability, June 19

Recorded Lectures

Day 4: Causal inference, Parameter Estimation/Likelihood, and Linear Algebra, June 20

Recorded Lectures

Day 5: Data Wrangling in R with dplyr, Parts I and II, June 21

Recorded Lectures

Week 2

Day 6: Visualization Data in R with ggplot2 - Part I & II and Generalized Linear Models, June 24

Recorded Lectures

Day 7: Machine Learning I & Model Selection, June 25

Recorded Lectures

Day 8: Machine Learning II & Unsupervised Learning/Clustering I, June 26

Recorded Lectures
  • Correlated data models - Hartman
  • No recording available (Machine Learning II - Wiens)
  • No recording available (Unsupervised Learning, Clustering I - Koutra)

Day 9: Unsupervised Learning/Clustering II and Model Selection II, June 27

Recorded Lectures

Day 10: Python Workshop I and II, June 28

Recorded Lectures

Week 3

Day 11: Data Mining I and Visualization I, July 1

Recorded Lectures

Day 12: Data Mining II and Precision Health, July 2

Recorded Lectures

Day 13: Visualization II and Intro to Bayes I, July 3

Recorded Lectures

Day 14: July 4 - NO CLASS

Day 15: Intro to Bayes II, July 5

Recorded Lectures

Week 4

Day 16: From Genomics to Prevention of Cardiovascular Diseases and R Markdown, July 8

Recorded Lectures

Day 17: Bayes Computation I and II, July 9

Recorded Lectures
  • No recordings available (Computation I & II - Chen)

Day 18: Reading Like a Scientific Writer and Social Network, July 10

Recorded Lectures
  • No recording available (Reading like a scientific writer - Griffiths)
  • No recording available (Social Network - Adar)
  • No recording available (Journey Lecture-Bowman)

Day 19: Stroke Disparities and Human-Centered Computing: Using Speech to Understand Behavior, July 11

Recorded Lectures
  • Stroke disparities - Lisabeth
  • No recording available (Human-Centered Computing: Using Speech to Understand Behavior - Provost)

Day 20: Spatial Epidemiology, July 12

Recorded Lectures
  • Journey Lecture - Spino
  • No recording available (Spatial Epidemiology - Zelner)
  • No recording available (State of the Institute - Mukherjee)

Week 5

Day 21: Natural Language Processing I and II, July 15

Recorded Lectures
  • No recording available (Natural Language Processing I & II - Singh)

Day 22: Optimization I and II, July 16

Recorded Lectures
  • No recording available (Optimization I & II - Kang)

Day 23: Writing from Point A to Point B and Bayesian Data Integration and Precision Medicine, July 17

Recorded Lectures

Day 24: Radiation Oncology and Imaging Analysis and Optimization in Health, July 18

Recorded Lectures

Day 25: Confessions of a Clinical Researcher, July 19

Recorded Lectures
  • No recording available ( Better, Not Just Bigger Data Analytics: Confessions of a Clinical Researcher - Nallamothu)
  • No recording available (Journey Lecture - Orozco del Pino)
  • No recording available (Journey Lecture - Beesley)
  • No recording available (State of the Institute - Zoellner)

Week 6

Day 26: Preparing for Graduate School and CVs and Resumes, July 22

Recorded Lectures

Day 27: Pick Me!, July 23

Recorded Lectures
  • No recording available (TBD - Grifftihs)

Day 29: Symposium

2019 Professor Lectures Presentations

2019 Student Poster Presentations

2018 Student Poster Presentations

2017 Student Poster Presentations

2017 Symposium Reference Files
2017 Symposium Projects

Additional Resources