The Ultimate Simpsons Tapped Out Experience: 2025 Unlimited Donuts Cash (No Human Verification)

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Welcome to the U-M Big Data 2016 Summer Program Wiki!

Consult the User's Guide for information on using the wiki software.

Reading Material

Data Mining Group

EHR Group

Genomics Group

2016 Presentations

Day 1: June 13

Day 2: June 14

Day 3: June 15

Day 4: June 16

Day 5 June 17

Day 6 June 20

Day 7 June 21

Day 8 June 22

Day 9 June 23

Day 10 June 24

Day 11 June 27

Day 12 June 28

Day 13 June 29

Day 14 June 30

Day 15 July 1

Day 17 July 5

Day 18 July 6

Day 19 July 7

Day 20 July 8

Day 21 July 11

Day 22 July 12

Day 23 July 13

Day 24 July 14

Day 25 July 15

Day 26 July 18

Day 27 July 19

Day 28 July 20

Symposium

Student Group Presentations

Student Poster Presentations

Getting started






















Welcome!

Welcome to our wiki!

If you would like to contribute, log-in or request an account. We recommend using your e-mail address or Michigan uniqname as your user id.

For basic instructions, see the Wikipedia Tutorial. Sequence Analysis Tools

We are developing software tools for the analysis of next generation sequence data.

These tools include:

Variant Calling with GlfSingle and GlfMultiples Variant Calling and De Novo Mutation Detection in Families with Polymutt Variant Annotations using VcfCodingSnps Rare Variant Analysis using RvTests Rare Variant Association Analysis in family samples FamRvTest Quality control using FastQValidator, VerifyBamID, and BamValidator C++ APIs for sequence analsysis using C++ Library: libStatGen Meta-analysis of single variant or gene-level associations RAREMETAL-SOFTWARE Sequencing study design helper Rarefy Local ancestry inference (ancestry painting) using off-targeted sequence data SEQMIX Association Container Toolbox EPACTS Fast Genotype Imputation Tool : Minimac3

These tools and additional tools can be found on the Software page.

We are developing Genome/Sequencing Processing Pipelines for anyone to use: GotCloud High Level Tutorials

Some high-level tutorials on the analysis of next generation sequence data:

Evaluating a Read Mapper on Simulated Data SNP Call Set Properties Generic Exome Analysis Plan

Projects

NHLBI Genome Sequencing Project

SardiNIA - The SardiNIA longitudinal study of aging.

Exome Meta-analysis of Drinking and Smoking (EMADS)

The 1000 Genomes Project Learn Genetics

Faculty in the group teach in a variety of formal and informal settings. Class notes and relevant discussion are archived here. General Resources

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